Publication	Data		Fish	Anatomy
Smith et al., 2020	Fig 1		cdipthsc158/hsc158	whole organism cdipt expression decreased amount, abnormal
	Fig 2		cdipthsc158/hsc158	cloaca degenerate, abnormal intestine morphology, abnormal liver morphology, abnormal mandibular arch skeleton malformed, abnormal ventral fin fold degenerate, abnormal
	Fig 3		cdipthsc158/hsc158	skeletal muscle cell junctional sarcoplasmic reticulum membrane decreased distance skeletal muscle cell junctional sarcoplasmic reticulum membrane, abnormal
	Fig 4		cdipthsc158/hsc158	swimming decreased linear velocity, abnormal
Thakur et al., 2014	Fig. 1		cdipthi559Tg/hi559Tg ,   cdipthi559Tg/hi559Tg; nz117Tg	intestinal epithelial cell detached from intestinal epithelium, abnormal intestinal epithelial cell disorganized, abnormal intestinal epithelial cell shape, abnormal intestinal villus damage, abnormal intestine decreased size, abnormal intestine decreased volume, abnormal whole organism dead, abnormal
	Fig. 2		cdipthi559Tg/hi559Tg	goblet cell condensed nuclear chromosome increased amount, abnormal goblet cell detached from intestinal epithelium, abnormal goblet cell disorganized, abnormal goblet cell mislocalised, abnormal intestinal epithelial cell brush border atrophied, abnormal intestinal epithelial cell brush border morphology, abnormal intestinal epithelial cell cortical actin cytoskeleton decreased thickness, abnormal intestinal epithelial cell cytoplasm immature, abnormal intestinal epithelial cell detached from intestinal epithelium, abnormal intestinal epithelial cell disorganized, abnormal intestinal epithelial cell shape, abnormal intestinal epithelial cell vesicle increased size, abnormal intestinal villus damage, abnormal intestine mucus layer decreased thickness, abnormal response to bacterium disrupted, abnormal
	Fig. 3		cdipthi559Tg/hi559Tg ,   cdipthi559Tg/hi559Tg; nz117Tg	intestinal epithelial cell apoptotic, abnormal intestinal epithelial cell cell population proliferation decreased process quality, abnormal intestinal epithelium decreased thickness, abnormal response to bacterium increased process quality, abnormal
	Fig. 4		cdipthi559Tg/hi559Tg	enteroendocrine cell autophagosome increased amount, abnormal goblet cell increased amount, abnormal intestinal epithelial cell autophagosome increased amount, abnormal intestinal epithelial cell autophagy of mitochondrion increased process quality, abnormal intestinal epithelial cell endoplasmic reticulum distended, abnormal intestinal epithelial cell Golgi apparatus distended, abnormal intestinal epithelial cell mitochondrion decreased amount, abnormal intestinal epithelial cell mitochondrion morphology, abnormal intestinal epithelial cell vesicle increased size, abnormal
	Fig. 7		cdipthi559Tg/hi559Tg ,   cdipthi559Tg/hi559Tg; nz117Tg	intestinal epithelial cell apoptotic, abnormal intestinal villus damage, abnormal intestine decreased size, abnormal intestine decreased volume, abnormal intestine leukocyte increased amount, abnormal response to bacterium increased process quality, abnormal
	Fig. S1		cdiptnt9/nt9 ,   WT + MO5-cdipt ,   cdipthi559Tg/hi559Tg ,   cdiptnt9/+; cdipthi559Tg/+	intestine decreased size, abnormal intestine decreased volume, abnormal
	Fig. S2		cdipthi559Tg/hi559Tg	goblet cell cytoskeleton disorganized, abnormal goblet cell exocytic vesicle morphology, abnormal intestinal epithelial cell apoptotic, abnormal intestinal epithelial cell brush border decreased thickness, abnormal intestinal epithelial cell detached from intestinal epithelium, abnormal intestinal epithelial cell vesicle increased amount, abnormal intestinal epithelial cell vesicle increased size, abnormal intestine mucus layer decreased thickness, abnormal mid intestine goblet cell decreased amount, abnormal
	Fig. S5		cdipthi559Tg/hi559Tg	intestinal epithelial cell autophagosome increased amount, abnormal intestinal epithelial cell autophagy increased occurrence, abnormal intestinal epithelial cell autophagy of mitochondrion increased process quality, abnormal intestinal epithelial cell endoplasmic reticulum lumen distended, abnormal intestinal epithelial cell endoplasmic reticulum lumen vacuolated, abnormal intestinal epithelial cell positive regulation of autophagy in response to ER overload increased process quality, abnormal pancreatic acinar cell endoplasmic reticulum lumen distended, abnormal
Blaker-Lee et al., 2012	Fig. 2		WT + MO3-cdipt	brain morphology, abnormal ventricular system decreased size, abnormal
	Fig. S2		WT + MO3-cdipt ,   cdipthi559Tg/hi559Tg	forebrain decreased width, abnormal ventricular system decreased size, abnormal
Murphy et al., 2011	Fig. 1		cdiptnt9/nt9 ,   cdipthi559Tg/hi559Tg ,   cdiptnt9/+; cdipthi559Tg/+ ,   WT + MO2-cdipt	lens cell disorganized, abnormal lens cell poorly differentiated, abnormal lens decreased size, abnormal lens degenerate, abnormal lens epithelium columnar/cuboidal epithelial cell disorganized, abnormal lens epithelium columnar/cuboidal epithelial cell morphology, abnormal lens opaque, abnormal retina layer formation disrupted, abnormal retinal photoreceptor layer aplastic, abnormal retinal photoreceptor layer eye photoreceptor cell disorganized, abnormal retinal photoreceptor layer eye photoreceptor cell immature, abnormal
	Fig. 2		cdipthi559Tg/hi559Tg	eye photoreceptor cell chromatin condensed, abnormal retinal photoreceptor layer retinal cone cell disorganized, abnormal retinal photoreceptor layer retinal rod cell disorganized, abnormal
	Fig. 3		cdipthi559Tg/hi559Tg	eye decreased size, abnormal lens cell poorly differentiated, abnormal lens epithelium columnar/cuboidal epithelial cell disorganized, abnormal lens epithelium columnar/cuboidal epithelial cell shape, abnormal retinal photoreceptor layer lacks all parts of type retinal cone cell, abnormal retinal photoreceptor layer lacks all parts of type retinal rod cell, abnormal
	Fig. 4		cdipthi559Tg/hi559Tg	lens cell disorganized, abnormal retinal photoreceptor layer has fewer parts of type retinal rod cell, abnormal retinal photoreceptor layer lacks parts or has fewer parts of type retinal cone cell, abnormal
	Fig. 5		cdipthi559Tg/hi559Tg	apoptotic process increased occurrence, abnormal lens cell apoptotic, abnormal retinal photoreceptor layer eye photoreceptor cell apoptotic, abnormal
Thakur et al., 2011	Fig. 1		cdipthi559Tg/hi559Tg	eye decreased size, abnormal intestine decreased size, abnormal liver increased pigmentation, abnormal liver spheroid, abnormal
	Fig. 3		cdipthi559Tg/hi559Tg	hepatic sinusoid decreased size, abnormal hepatocyte nucleus mislocalised, abnormal hepatocyte vacuolated, abnormal
	Fig. 4		cdipthi559Tg/hi559Tg	hepatic sinusoid decreased size, abnormal hepatocyte apoptotic, abnormal hepatocyte necrotic, abnormal hepatocyte vacuolated, abnormal liver fatty, abnormal
	Fig. 7		cdipthi559Tg/hi559Tg	hepatocyte endoplasmic reticulum lumen swollen, abnormal hepatocyte endoplasmic reticulum lumen vacuolated, abnormal hepatocyte fatty, abnormal hepatocyte mitochondrion morphology, abnormal hepatocyte necrotic, abnormal hepatocyte nucleus mislocalised, abnormal hepatocyte vacuolated, abnormal
	Fig. S2		WT + MO5-cdipt ,   WT + MO4-cdipt	liver increased pigmentation, abnormal liver spheroid, abnormal
	Fig. S6		cdipthi559Tg/hi559Tg	hepatic sinusoid decreased size, abnormal liver blood vessel morphology, abnormal
	text only		cdipthi559Tg/hi559Tg	whole organism dead, abnormal
Phenotype Annotation (1994-2006)	Fig. for (hi559)		cdipthi559Tg	eye decreased size, abnormal gut quality, abnormal liver quality, abnormal pharyngeal arch 3-7 skeleton quality, abnormal
	Fig. for (nt9)		cdiptnt9	eye decreased size, abnormal lens quality, abnormal
Vihtelic et al., 2005	Fig. 1		cdiptnt9/nt9	cranium increased width, abnormal cranium shortened, abnormal head swollen, abnormal lens opaque, abnormal trunk swollen, abnormal ventral mandibular arch protruding, abnormal whole organism buoyancy, abnormal
	Fig. 2		cdiptnt9/nt9	cell population proliferation increased occurrence, abnormal ciliary marginal zone hyperplastic, abnormal eye photoreceptor cell decreased amount, abnormal lens fiber cell differentiation disrupted, abnormal lens morphology, abnormal lens position, abnormal
	Fig. 3		cdiptnt9/nt9	eye photoreceptor cell decreased amount, abnormal lens degenerate, abnormal lens disorganized, abnormal lens epithelium disorganized, abnormal lens fiber cell differentiation disrupted, abnormal lens opaque, abnormal photoreceptor cell development disrupted, abnormal retina central region lacks all parts of type eye photoreceptor cell, abnormal retina lacks all parts of type photoreceptor outer segment layer, abnormal
Amsterdam et al., 2004	text only		cdipthi559Tg/hi559Tg	eye decreased size, abnormal gut hypoplastic, abnormal head decreased size, abnormal liver hypoplastic, abnormal mandibular arch skeleton increased thickness, abnormal