ZFIN ID: ZDB-GENE-990714-15

Mapping Details

Gene Name: DNA (cytosine-5-)-methyltransferase 1
Symbol: dnmt1
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN JBrowse 3 54,591,218 - 54,607,166 GRCz11
Ensembl 3 54,591,218 - 54,607,166 GRCz11
Vega 3 54,336,616 - 54,352,585 GRCv10
NCBI Map Viewer 3 54,591,218 - 54,607,216 GRCz11
UCSC 3 - GRCz11
Mapped Clones containing dnmt1
CH73-160J1 Chr: 3 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Citations
rj794 3 54,597,721 GRCz11 Liu et al., 2015
s872 3 54,591,701 - 54,591,702 GRCz11 Anderson et al., 2009
s904 3 54,600,854 GRCz11 Anderson et al., 2009
sa16282 3 54,601,929 GRCz11 Busch-Nentwich et al., 2013
3 54,347,327 GRCz10 Busch-Nentwich et al., 2013
3 55,453,601 Zv9 Busch-Nentwich et al., 2013
sa20150 3 54,597,933 GRCz11 Busch-Nentwich et al., 2013
3 54,343,331 GRCz10 Busch-Nentwich et al., 2013
3 55,449,605 Zv9 Busch-Nentwich et al., 2013
sa40171 3 54,596,372 GRCz11 Busch-Nentwich et al., 2013
3 54,341,770 GRCz10 Busch-Nentwich et al., 2013
3 55,448,044 Zv9 Busch-Nentwich et al., 2013
sa40172 3 54,600,520 GRCz11 Busch-Nentwich et al., 2013
3 54,345,918 GRCz10 Busch-Nentwich et al., 2013
3 55,452,192 Zv9 Busch-Nentwich et al., 2013
sa40173 3 54,602,947 GRCz11 Busch-Nentwich et al., 2013
3 54,348,345 GRCz10 Busch-Nentwich et al., 2013
3 55,454,619 Zv9 Busch-Nentwich et al., 2013
sa40174 3 54,602,948 GRCz11 Busch-Nentwich et al., 2013
3 54,348,346 GRCz10 Busch-Nentwich et al., 2013
3 55,454,620 Zv9 Busch-Nentwich et al., 2013

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
3 91.8 cM dnmt1 Heat Shock (HS) Woods, Ian G. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
ppan GENE 3 Anderson et al., 2009 Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using SSLP and RFLP markers.
s872 Feature 3 Anderson et al., 2009 Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using SSLP and RFLP markers.
angptl6 GENE 3 Anderson et al., 2009 Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using SSLP and RFLP markers.
s1pr2 GENE 3 Anderson et al., 2009 Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using SSLP and RFLP markers.
s904 Feature 3 Anderson et al., 2009 Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using SSLP and RFLP markers.
eif3g GENE 3 Anderson et al., 2009 Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using SSLP and RFLP markers.
s1pr2 GENE 3 Kupperman et al., 2000 Kupperman et al. (Nature 406, 192-195, 2000) mapped edg5 (mil) 16.5 cM distal  ...
z3725 SSLP 3 16.5 cM Kupperman et al., 2000 Kupperman et al. (Nature 406, 192-195, 2000) mapped edg5 (mil) 16.5 cM distal  ...

OTHER MAPPING INFORMATION
Chr 3 Anderson et al., 2009 Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using  ...
Markers Encoded by dnmt1
fb05h01 Chr: 3 Details
Genomic Feature s904 is an allele of dnmt1
Marker Type Chr Distance Publication / Person Comments
s872 Feature 3 Anderson et al., 2009 Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using SSLP and RFLP markers.
s1pr2 GENE 3 Anderson et al., 2009 Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using SSLP and RFLP markers.
ppan GENE 3 Anderson et al., 2009 Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using SSLP and RFLP markers.
angptl6 GENE 3 Anderson et al., 2009 Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using SSLP and RFLP markers.
eif3g GENE 3 Anderson et al., 2009 Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using SSLP and RFLP markers.
dnmt1 GENE 3 Anderson et al., 2009 Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using SSLP and RFLP markers.
Genomic Feature s872 is an allele of dnmt1
Marker Type Chr Distance Publication / Person Comments
s1pr2 GENE 3 Anderson et al., 2009 Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using SSLP and RFLP markers.
ppan GENE 3 Anderson et al., 2009 Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using SSLP and RFLP markers.
angptl6 GENE 3 Anderson et al., 2009 Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using SSLP and RFLP markers.
eif3g GENE 3 Anderson et al., 2009 Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using SSLP and RFLP markers.
dnmt1 GENE 3 Anderson et al., 2009 Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using SSLP and RFLP markers.
s904 Feature 3 Anderson et al., 2009 Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using SSLP and RFLP markers.
Genomic Feature s872 is an allele of dnmt1
Chr 3 Anderson et al., 2009 Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using  ...
Genomic Feature s904 is an allele of dnmt1
Chr 3 Anderson et al., 2009 Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using  ...
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