ZFIN ID: ZDB-GENE-020712-1

Mapping Details

Gene Name:	protein associated with LIN7 1, MAGUK p55 family member a
Symbol:	pals1a

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN JBrowse	17	34,206,167 - 34,239,514	GRCz11
Ensembl	17	34,206,167 - 34,239,514	GRCz11
Vega	17	34,258,221 - 34,291,568	GRCv10
NCBI Map Viewer	17	34,186,632 - 34,242,334	GRCz11
UCSC	17	-	GRCz11

Mapped Clones containing pals1a
CH211-37L23	Chr: 17 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Citations
m520	17	34,234,220	GRCz11	ZFIN Curated Data
sa2908	17	34,231,513	GRCz11	Busch-Nentwich et al., 2013
	17	34,283,567	GRCz10	Busch-Nentwich et al., 2013
	17	34,398,643	Zv9	Busch-Nentwich et al., 2013
sa15209	17	34,231,192	GRCz11	Busch-Nentwich et al., 2013
	17	34,283,246	GRCz10	Busch-Nentwich et al., 2013
	17	34,398,322	Zv9	Busch-Nentwich et al., 2013
sa36468	17	34,238,792	GRCz11	Busch-Nentwich et al., 2013
	17	34,290,846	GRCz10	Busch-Nentwich et al., 2013
	17	34,405,922	Zv9	Busch-Nentwich et al., 2013
zju203	17	34,216,069 - 34,216,073	GRCz11	Hao et al., 2020

GENETIC MAPPING PANELS: No data available

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person	Comments
z11341	SSLP	17	0.12 cM	Wei et al., 2002	Wei and Malicki (2002. Nat Genet 31:150-157.) report mapping nok to LG17 between z11341 and z4332 using half-tetrad analysis and a high resolution F2 mapping panel. A chromosome walk using BAC and PAC clones identified a 55kb region containing nok and was then sequenced. nok is approximately 0.12cM from z11431 and 1.2cM from z4332.
z4332	SSLP	17	1.2 cM	Wei et al., 2002	Wei and Malicki (2002. Nat Genet 31:150-157.) report mapping nok to LG17 between z11341 and z4332 using half-tetrad analysis and a high resolution F2 mapping panel. A chromosome walk using BAC and PAC clones identified a 55kb region containing nok and was then sequenced. nok is approximately 0.12cM from z11431 and 1.2cM from z4332.

OTHER MAPPING INFORMATION: No data available

Genomic Feature m520 is an allele of pals1a