ZFIN Mapping: sa29528

ZFIN ID: ZDB-GENE-990415-238

Gene Name:	retinal homeobox gene 3
Symbol:	rx3

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN JBrowse	21	10,756,154 - 10,759,223	GRCz11
Ensembl	21	10,756,154 - 10,759,223	GRCz11
Vega	21	10,663,526 - 10,666,595	GRCv10
NCBI Map Viewer	21	10,756,265 - 10,759,223	GRCz11
UCSC	21	-	GRCz11

Mapped Clones containing rx3
CH211-233A1	Chr: 21 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Citations
s399	21	10,757,057	GRCz11	Loosli et al., 2003
sa29528	21	10,757,122	GRCz11	Busch-Nentwich et al., 2013
	21	10,664,494	GRCz10	Busch-Nentwich et al., 2013
	21	9,292,441	Zv9	Busch-Nentwich et al., 2013
t25181	21	10,757,004	GRCz11	Rojas-Munoz et al., 2005
t25327	21	10,758,387	GRCz11	Rojas-Munoz et al., 2005
w29	21	10,757,057	GRCz11	ZFIN Curated Data

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
21	50.9 cM	rx3	Mother of Pearl (MOP)	Postlethwait, John H.	Data
21	42.7 cM	rx3	Heat Shock (HS)	Woods, Ian G.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person	Comments
z12068	SSLP	21		Rojas-Munoz et al., 2005	rx3 was located on LG21 between markers Z17336 (3/720 recombinants) and z12068 ...
z17336	SSLP	21		Rojas-Munoz et al., 2005	rx3 was located on LG21 between markers Z17336 (3/720 recombinants) and z12068 ...

Chr 21

rx3 was located on LG21 between markers Z17336 (3/720 recombinants) and z12068 (5/48 recombinants).

Genomic Feature s399 is an allele of rx3

Marker	Type	Chr	Distance	Publication / Person	Comments
z10432	SSLP	21		Loosli et al., 2003

Genomic Feature w29 is an allele of rx3

Marker	Type	Chr	Distance	Publication / Person	Comments
z10432	SSLP	21		Kennedy et al., 2004	Kennedy et al. (2004, Dev. Biol. 270(2):336-349) mapped chk w29 to LG 21 corresponding to rx3 using SSLPs.
z7925	SSLP	21		Kennedy et al., 2004	Kennedy et al. (2004, Dev. Biol. 270(2):336-349) mapped chk w29 to LG 21 corresponding to rx3 using SSLPs.

Genomic Feature s399 is an allele of rx3

Chr 21

Genomic Feature w29 is an allele of rx3

Chr 21

Kennedy et al. (2004, Dev. Biol. 270(2):336-349) mapped chk w29 to LG 21 corresponding to ...

Mapping Details