ZFIN ID: ZDB-GENE-030131-2193

Mapping Details

Gene Name: PR domain containing 1a, with ZNF domain
Symbol: prdm1a
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN JBrowse 16 7,430,998 - 7,443,388 GRCz11
Ensembl 16 7,430,998 - 7,443,388 GRCz11
Vega 16 7,513,652 - 7,526,042 GRCv10
NCBI Map Viewer 16 7,430,998 - 7,443,372 GRCz11
UCSC 16 - GRCz11
Mapped Clones containing prdm1a
DKEY-11F5 Chr: 16 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Citations
sa6407 16 7,432,699 GRCz11 Busch-Nentwich et al., 2013
16 7,515,353 GRCz10 Busch-Nentwich et al., 2013
16 8,652,099 Zv9 Busch-Nentwich et al., 2013
sa9796 16 7,437,514 GRCz11 Busch-Nentwich et al., 2013
16 7,520,168 GRCz10 Busch-Nentwich et al., 2013
16 8,656,914 Zv9 Busch-Nentwich et al., 2013
sa22750 16 7,432,369 GRCz11 Busch-Nentwich et al., 2013
16 7,515,023 GRCz10 Busch-Nentwich et al., 2013
16 8,651,769 Zv9 Busch-Nentwich et al., 2013

GENETIC MAPPING PANELS: No data available

OTHER MAPPING INFORMATION
Markers Encoded by prdm1a
fb99c12 Chr: 16 Details
Genomic Feature tp39 is an allele of prdm1a
Chr Location Mapped As Panel Mapped By Scoring
16 24.2 cM tp39 Boston MGH Cross (MGH) Geisler, Robert Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
Genomic Feature tp39 is an allele of prdm1a
Marker Type Chr Distance Publication / Person Comments
z6329 SSLP 16 0.42 cM Baxendale et al., 2004 Baxendale et al. Nat. Gen. 36(1):88-93 (2004) mapped the ubo locus to a 1.1 cM  ...
z19602 SSLP 16 0.65 cM Baxendale et al., 2004 Baxendale et al. Nat. Gen. 36(1):88-93 (2004) mapped the ubo locus to a 1.1 cM  ...
z6365 SSLP 16 Baxendale et al., 2004 Baxendale et al. Nat. Gen. 36(1):88-93 (2004) mapped the ubo locus to a 1.1 cM  ...
Genomic Feature m805 is an allele of prdm1a
Marker Type Chr Distance Publication / Person Comments
z19602 SSLP 16 Hernandez-Lagunas et al., 2005
z6365 SSLP 16 Hernandez-Lagunas et al., 2005
Genomic Feature m805 is an allele of prdm1a
Chr 16 Hernandez-Lagunas et al., 2005
Genomic Feature prdm1a_unspecified is an allele of prdm1a
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