Transcript

ptp4a1-007

ID

ZDB-TSCRIPT-160112-125

Name

ptp4a1-007 Nomenclature History

Previous Names

None

Transcript Type

ncRNA

Annotation Status

retained intron

Annotation Method

Ensembl

Associated With Genes

ptp4a1 (1)

Strain

Non Reference Strain

Genome Resources

RNA Central

None

Note

None

Sequence

ENSDART00000172939 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|ENSDART00000172939.2|gene_biotype:protein_coding|ENSDARG00000006242.12 transcript_biotype:retained_intron gene_symbol:ptp4a1 cdna chromosome:GRCz11:11:11267906:11272314:1
ACACACACGGCAGCGCTGTATGGTCAAACACCACAACAAT
TATTCTCCTGGACGGCTTCATGATTAAGCTACAATCTTCA
ATGAGTAAGCATATTCCACAGTTCTGTGGTGTTTTGGGTC
ACACATTTATGGAGTTTCTGAAGGGCAGTGGGGATTACTG
CCAGGCTCAGCACGGCGTTTATGCAGAGAAGTGAACGGCT
AGCCTCGCTACCTCATCAGAAGAGAGACTTGTGTTACAGT
TTTAACGTTGGCGGGTTCAGGCTTGGAGAGCAGGCGTCCA
CATCGGTCGGCGGTCCTGGATGGGGTAAAAAAAATCTCTT
GAAGTGCACTGCCCTCGTCGGCCCTTCGTCTTCACTCTCA
CCAGAGGACCAGCCTCCTTTTTTCTTTTCTTTTGTGATTG
ATTTTTTTCCACCCTCTTTCCTATTTCATTTTTGTTGTTT
TGTCCTTAACTTTTAATCCTGCCCACCTCTGGCTCACACC
TCATTTCCTAATTACATCCGCCAGAGTTTCTTTAATCTTC
TGTTACTGGAGAGAGTTTCTCCCATATTTTTTTTCAAGAT
TTTCAAGCTCTATTGCAAAGTCAAAAATGGCTCGTATGAA
TAGACCTGCCCCAGTGGAGATCACTTACAAAAACATGAGA
TTCCTCATTACCCACAATCCCACTAATGCCACGCTTCACA
AATTCATCGAGGTGAGTTCCAATAGCTCGAACTTTCTGAA
AGTGATGTTTGCATGGACAATTATAAAAAGCTCTTGATTA
CACCCTTTTCCCAATCGCAAAACTTTGACTGTTATTTGAC
TTCATATCAAATAACTGCAAAATATCACACATCACTGTCT
TCCATCAGGAACTGAAGAAATATGGGGTGACAACGGTTGT
TAGAGTGTGCGAGGCCACGTATGATGCAAACCTGGTTGTC
AAGGAGGGCATTCAGGTTCTGG

OTTDART00000062647 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|OTTDART00000062647|OTTDARG00000034922| ptp4a1|no_translation ptp4a1-007 LG_ BX324177.48 Danio rerio protein_coding KNOWN, 942 bp
ACACACACGGCAGCGCTGTATGGTCAAACACCACAACAAT
TATTCTCCTGGACGGCTTCATGATTAAGCTACAATCTTCA
ATGAGTAAGCATATTCCACAGTTCTGTGGTGTTTTGGGTC
ACACATTTATGGAGTTTCTGAAGGGCAGTGGGGATTACTG
CCAGGCTCAGCACGGCGTTTATGCAGAGAAGTGAACGGCT
AGCCTCGCTACCTCATCAGAAGAGAGACTTGTGTTACAGT
TTTAACGTTGGCGGGTTCAGGCTTGGAGAGCAGGCGTCCA
CATCGGTCGGCGGTCCTGGATGGGGTAAAAAAAATCTCTT
GAAGTGCACTGCCCTCGTCGGCCCTTCGTCTTCACTCTCA
CCAGAGGACCAGCCTCCTTTTTTCTTTTCTTTTGTGATTG
ATTTTTTTCCACCCTCTTTCCTATTTCATTTTTGTTGTTT
TGTCCTTAACTTTTAATCCTGCCCACCTCTGGCTCACACC
TCATTTCCTAATTACATCCGCCAGAGTTTCTTTAATCTTC
TGTTACTGGAGAGAGTTTCTCCCATATTTTTTTTCAAGAT
TTTCAAGCTCTATTGCAAAGTCAAAAATGGCTCGTATGAA
TAGACCTGCCCCAGTGGAGATCACTTACAAAAACATGAGA
TTCCTCATTACCCACAATCCCACTAATGCCACGCTTCACA
AATTCATCGAGGTGAGTTCCAATAGCTCGAACTTTCTGAA
AGTGATGTTTGCATGGACAATTATAAAAAGCTCTTGATTA
CACCCTTTTCCCAATCGCAAAACTTTGACTGTTATTTGAC
TTCATATCAAATAACTGCAAAATATCACACATCACTGTCT
TCCATCAGGAACTGAAGAAATATGGGGTGACAACGGTTGT
TAGAGTGTGCGAGGCCACGTATGATGCAAACCTGGTTGTC
AAGGAGGGCATTCAGGTTCTGG

Related Transcripts

Transcripts related to ptp4a1

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	ptp4a1-205 (1) Ensembl	Ensembl	806 nt	Select Tool
aberrant processed transcript	ptp4a1-206 (1) Ensembl	Ensembl	1,109 nt	Select Tool
mRNA	ptp4a1-201 (1) Ensembl	Ensembl	2,002 nt	Select Tool
mRNA	ptp4a1-202 (1) Ensembl	Ensembl	727 nt	Select Tool
mRNA	ptp4a1-203 (1) Ensembl	Ensembl	1,411 nt	Select Tool ZFIN BLAST
mRNA	ptp4a1-204 (1) Ensembl	Ensembl	135 nt	Select Tool
mRNA	ptp4a1-208 (1) Ensembl	Ensembl	821 nt	Select Tool
mRNA	ptp4a1-209 (1) Ensembl	Ensembl	541 nt	Select Tool ZFIN BLAST
ncRNA	ptp4a1-007	Ensembl	942 nt

Segment Relationships

Protein Products

No data available

Supporting Sequences

Citations