Transcript

ptp4a1-205

ID

ZDB-TSCRIPT-141209-3208

Name

ptp4a1-205 Nomenclature History

Previous Names

ptp4a1-005

Transcript Type

aberrant processed transcript

Annotation Status

nonsense mediated decay

Annotation Method

Ensembl

Associated With Genes

ptp4a1 (1)

Strain

Non Reference Strain

Genome Resources

RNA Central

None

Note

None

Sequence

ENSDART00000166489 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|ENSDART00000166489.2|gene_biotype:protein_coding|ENSDARG00000006242.12 transcript_biotype:nonsense_mediated_decay gene_symbol:ptp4a1 cdna chromosome:GRCz11:11:11271934:11274600:1
TTCAAGCTCTATTGCAAAGTCAAAAATGGCTCGTATGAAT
AGACCTGCCCCAGTGGAGATCACTTACAAAAACATGAGAT
TCCTCATTACCCACAATCCCACTAATGCCACGCTTCACAA
ATTCATCGAGGAACTGAAGAAATATGGGGTGACAACGGTT
GTTAGAGTGTGCGAGGCCACGTATGATGCAAACCTGGTTG
TCAAGGAGGGCATTCAGGTTCTGGATTGGCCCTTTGATGA
TGGAGCTCCTCCCTCCAACCAGATTGTTGATGATTGGCTG
AATCTTCTTCGGGTTAAGTTCAGGGAGGAGCCAGGATGCT
GCATTGCCGTGCATTGTGTGGCAGGCCTTGGAAGAGCCCC
AGTGCTGGTTGCCCTGGCCCTGATTGAGTGTGGGATGAAG
TATGAGGATGCTGTTCAATTCATTCGACAAAAGCGGCGTG
GAGCATTTAACAGCAAGCAGCTTTTCTACCTGGAAAAATA
TCGTCCCAAAATGCGTCTTCGATTCAAGGATTCCAACGGA
CATCGCACCAACTGCTGCATTCATGTCCCATTCCCTCCTC
TTCATTTCTGTATTTCCTGTGGAGAACCTCTGTCAGCAAG
GTGAAGTGCTTGTTTGATGAACATGAGCTTAGTGTTTTGC
GAGGAAGTCGGTTGGTGAACATGGTCAAATCCCGCCTCTG
CCAAACTCGTACAGAAAGACACCGTCTGGTGGAGGAGTTC
TCAATGGCATTTGGAGAGGGTTCTTGATGTCTTTTGCAGA
AAAAAAAATAGGAAGAGATTCTGAAGAAAAATCAAGGAAA
AAGAAA

OTTDART00000060781 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|OTTDART00000060781|OTTDARG00000034922|ZDB-GENE-041121-11 ptp4a1|OTTDARP00000046969 ptp4a1-005 LG_ BX324177.48 Danio rerio protein_coding KNOWN, 806 bp
TTCAAGCTCTATTGCAAAGTCAAAAATGGCTCGTATGAAT
AGACCTGCCCCAGTGGAGATCACTTACAAAAACATGAGAT
TCCTCATTACCCACAATCCCACTAATGCCACGCTTCACAA
ATTCATCGAGGAACTGAAGAAATATGGGGTGACAACGGTT
GTTAGAGTGTGCGAGGCCACGTATGATGCAAACCTGGTTG
TCAAGGAGGGCATTCAGGTTCTGGATTGGCCCTTTGATGA
TGGAGCTCCTCCCTCCAACCAGATTGTTGATGATTGGCTG
AATCTTCTTCGGGTTAAGTTCAGGGAGGAGCCAGGATGCT
GCATTGCCGTGCATTGTGTGGCAGGCCTTGGAAGAGCCCC
AGTGCTGGTTGCCCTGGCCCTGATTGAGTGTGGGATGAAG
TATGAGGATGCTGTTCAATTCATTCGACAAAAGCGGCGTG
GAGCATTTAACAGCAAGCAGCTTTTCTACCTGGAAAAATA
TCGTCCCAAAATGCGTCTTCGATTCAAGGATTCCAACGGA
CATCGCACCAACTGCTGCATTCATGTCCCATTCCCTCCTC
TTCATTTCTGTATTTCCTGTGGAGAACCTCTGTCAGCAAG
GTGAAGTGCTTGTTTGATGAACATGAGCTTAGTGTTTTGC
GAGGAAGTCGGTTGGTGAACATGGTCAAATCCCGCCTCTG
CCAAACTCGTACAGAAAGACACCGTCTGGTGGAGGAGTTC
TCAATGGCATTTGGAGAGGGTTCTTGATGTCTTTTGCAGA
AAAAAAAATAGGAAGAGATTCTGAAGAAAAATCAAGGAAA
AAGAAA

Related Transcripts

Transcripts related to ptp4a1

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	ptp4a1-205	Ensembl	806 nt
aberrant processed transcript	ptp4a1-206 (1) Ensembl	Ensembl	1,109 nt	Select Tool
mRNA	ptp4a1-201 (1) Ensembl	Ensembl	2,002 nt	Select Tool
mRNA	ptp4a1-202 (1) Ensembl	Ensembl	727 nt	Select Tool
mRNA	ptp4a1-203 (1) Ensembl	Ensembl	1,411 nt	Select Tool ZFIN BLAST
mRNA	ptp4a1-204 (1) Ensembl	Ensembl	135 nt	Select Tool
mRNA	ptp4a1-208 (1) Ensembl	Ensembl	821 nt	Select Tool
mRNA	ptp4a1-209 (1) Ensembl	Ensembl	541 nt	Select Tool ZFIN BLAST
ncRNA	ptp4a1-007 (1) Ensembl	Ensembl	942 nt	Select Tool

Segment Relationships

Protein Products

No data available

Supporting Sequences

Citations