Transcript

pdgfab-202

ID

ZDB-TSCRIPT-141209-970

Name

pdgfab-202 Nomenclature History

Previous Names

ottdart00000061473

Transcript Type

aberrant processed transcript

Annotation Status

nonsense mediated decay

Annotation Method

Ensembl

Associated With Genes

pdgfab (1)

Strain

Non Reference Strain

Genome Resources

RNA Central

None

Note

None

Sequence

ENSDART00000158815 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|ENSDART00000158815.2|gene_biotype:protein_coding|ENSDARG00000098578.2 transcript_biotype:nonsense_mediated_decay gene_symbol:pdgfab cdna chromosome:GRCz11:3:12945644:12970428:-1
CGCGCATGAGACAGCATTCAGTGCACGAGCTCCTGACAAC
AAGACCAGCTCTGAGCTCTTCCCCTCCTTGCTTTATTCAT
GGATACTAACCTGCTAGGATTGTACTTTCACCGCATGACG
AGCCACTTTTGGAAGAGCCGGTGCTGAGCTCCACATGAGG
TGCATGGACTCACTTCTAAACTCTTCTGAAGTTTCCCAAA
GAGTTTTATTCTTCATTAATTGGCATAGGCAATGCAAAAG
GCTTTAACTATTCGGATTGTTGGACAGCCATGACGACCTT
TTGCAACTTTTGAGATCTTTTTCTTCTTCTCCAGCATTTG
GACCAACACCTGGAGCTCCAGCTCGGATTTTTTTTTTCCT
CTTTAGACTTGAGCTGGTGCATCGGGTCATTTATAGAGAG
ATATCTTCAAGGTATGGTTCTGGACTCTCTGAGCTCAGGA
GCGGATCCAAAGCTCCTACAGTCTTCATCTTTCTTGCTGG
GTGGGAAATTGACATTGGAAGGAGATGAGAACCCTATTCT
GCTGCTTTCTGCTCCTCACCTCGCACCTTCTGCTGGCAGC
TGCTGAGAAGGAGTTTCCCATCCCTCAGGAGTTCATCGAC
AGACTGTCCCACAGCGAAATCAACAGCATCAGCGACCTCC
AGCGGCTACTGGAGGTCCTGGAAATGAGGTGATTGAGGAG
GTCAAGCAGAAGCACCATCAGAAGAGCCAGCATTCATACA
AGAGCTTCGCCTCCGATCTGAAGAGCCGACAGCTGTCCCA
TCGGCGGAAGAGGAGCGTTGTAGAGGAGGCGGTGCCGGCC
ATGTGCAAGACCCGGACGGTGATCTACGAGATCCCCCGCA
GTCAAGTGGATCCCACTGCTGCAAACTTCCTCATCT

OTTDART00000061473 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|OTTDART00000061473|OTTDARG00000027989|ZDB-GENE-060929-124 pdgfab|OTTDARP00000048015 pdgfab-002 LG_none BX511176.6,BX908774.13 Danio rerio protein_coding KNOWN, 876 bp
CGCGCATGAGACAGCATTCAGTGCACGAGCTCCTGACAAC
AAGACCAGCTCTGAGCTCTTCCCCTCCTTGCTTTATTCAT
GGATACTAACCTGCTAGGATTGTACTTTCACCGCATGACG
AGCCACTTTTGGAAGAGCCGGTGCTGAGCTCCACATGAGG
TGCATGGACTCACTTCTAAACTCTTCTGAAGTTTCCCAAA
GAGTTTTATTCTTCATTAATTGGCATAGGCAATGCAAAAG
GCTTTAACTATTCGGATTGTTGGACAGCCATGACGACCTT
TTGCAACTTTTGAGATCTTTTTCTTCTTCTCCAGCATTTG
GACCAACACCTGGAGCTCCAGCTCGGATTTTTTTTTTCCT
CTTTAGACTTGAGCTGGTGCATCGGGTCATTTATAGAGAG
ATATCTTCAAGGTATGGTTCTGGACTCTCTGAGCTCAGGA
GCGGATCCAAAGCTCCTACAGTCTTCATCTTTCTTGCTGG
GTGGGAAATTGACATTGGAAGGAGATGAGAACCCTATTCT
GCTGCTTTCTGCTCCTCACCTCGCACCTTCTGCTGGCAGC
TGCTGAGAAGGAGTTTCCCATCCCTCAGGAGTTCATCGAC
AGACTGTCCCACAGCGAAATCAACAGCATCAGCGACCTCC
AGCGGCTACTGGAGGTCCTGGAAATGAGGTGATTGAGGAG
GTCAAGCAGAAGCACCATCAGAAGAGCCAGCATTCATACA
AGAGCTTCGCCTCCGATCTGAAGAGCCGACAGCTGTCCCA
TCGGCGGAAGAGGAGCGTTGTAGAGGAGGCGGTGCCGGCC
ATGTGCAAGACCCGGACGGTGATCTACGAGATCCCCCGCA
GTCAAGTGGATCCCACTGCTGCAAACTTCCTCATCT

Related Transcripts

Transcripts related to pdgfab

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	pdgfab-202	Ensembl	876 nt
mRNA	pdgfab-201 (1) Ensembl	Ensembl	2,286 nt	Select Tool ZFIN BLAST
mRNA	pdgfab-204 (1) Ensembl	Ensembl	1,181 nt	Select Tool ZFIN BLAST
ncRNA	pdgfab-004 (1) Ensembl	Ensembl	579 nt	Select Tool ZFIN BLAST

Segment Relationships

Protein Products

No data available

Supporting Sequences

Citations