Transcript

rapgef5b-203

ID

ZDB-TSCRIPT-090929-18095

Name

rapgef5b-203 Nomenclature History

Previous Names

rapgef5b-003
rapgef5b-004
ottdart00000037694
zgc:165655-004

Transcript Type

aberrant processed transcript

Annotation Status

nonsense mediated decay

Annotation Method

Ensembl

Associated With Genes

rapgef5b (1)

Strain

Non Reference Strain

Genome Resources

RNA Central

None

Note

None

Sequence

ENSDART00000137107 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|ENSDART00000137107.2|gene_biotype:protein_coding|ENSDARG00000074307.6 transcript_biotype:nonsense_mediated_decay gene_symbol:rapgef5b cdna chromosome:GRCz11:16:19065345:19128471:1
TCAAGCAGGTCCCTGGAGCGGGGACACGAGACCGAGAGGA
GATCAGCCGTTTGGAGATGGTCCAGAGACTGGCCAAGGAT
GGATGCCGACTTCTGCACAGCCCGCTGAGAGTCAATGAAA
GGCCTGCTGAGCCCCTCGGTGACGCAGCAGTCCGTGTGTG
CGAGCGGAGCCACGAGGTGCTGCTTCCTAAGAGGACGACG
TCACTCAAATCTCCCTCCTCTTCCTCCTCCTCCTGGAGCC
GGAGGTACGCTGCCGTGCCTGCCAGCCCTGAAAAGGTTCT
GGAGCATGTACTGGGTCAGTTGAGGCTGGACGAAGAACAG
AAGAGCCTCCAGAGCAGAGAGACAGGTAAGGATGTGACAC
TTTACAACTCAGCCTTTTGGGGGTGTCAGATGTGGTCTGC
AGACTTGATGCACTGATGAAGACTTACAGATAGTCTGCTG
GATGATTTTCTTCTGACGTACCCAGTGTTCATGTCTACTA
GTGACCTGTGTCAAGCTCTACTTGACCCTGTACAGACACG
TTCTAGATGATCTCTACGAGTTCCCCCCGCTAGAGAAGGA
TCTCAAAGAACTTCAGAAACTTCTACGGATGCAAAGGAGA
CAGTAAGTCACAAACACACATACATATCTGATCCATCATG
CTGAATTTCATTAGTCTGAAATGATGAATTCCTCCTCAGC
AACTGATCTCTGGGAAGTTCTGGTATGAGAATTCATTGTA
GAGACATTAATCATATTCGCACAATAATGTCTCTTATTCA
TGGTCTTAAAAAATACAAGATGAGAGCTGGAAAAAGACTC
TCATCTACATTTTGAATAAATCATACTTTTAAAGAGA

OTTDART00000037694 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|OTTDART00000037694|OTTDARG00000033460|ZDB-GENE-061215-2 rapgef5b|OTTDARP00000030217 DKEY-233K19.1-004 LG_none CR391912.9,CR936240.10 Danio rerio protein_coding NOVEL, 837 bp
TCAAGCAGGTCCCTGGAGCGGGGACACGAGACCGAGAGGA
GATCAGCCGTTTGGAGATGGTCCAGAGACTGGCCAAGGAT
GGATGCCGACTTCTGCACAGCCCGCTGAGAGTCAATGAAA
GGCCTGCTGAGCCCCTCGGTGACGCAGCAGTCCGTGTGTG
CGAGCGGAGCCACGAGGTGCTGCTTCCTAAGAGGACGACG
TCACTCAAATCTCCCTCCTCTTCCTCCTCCTCCTGGAGCC
GGAGGTACGCTGCCGTGCCTGCCAGCCCTGAAAAGGTTCT
GGAGCATGTACTGGGTCAGTTGAGGCTGGACGAAGAACAG
AAGAGCCTCCAGAGCAGAGAGACAGGTAAGGATGTGACAC
TTTACAACTCAGCCTTTTGGGGGTGTCAGATGTGGTCTGC
AGACTTGATGCACTGATGAAGACTTACAGATAGTCTGCTG
GATGATTTTCTTCTGACGTACCCAGTGTTCATGTCTACTA
GTGACCTGTGTCAAGCTCTACTTGACCCTGTACAGACACG
TTCTAGATGATCTCTACGAGTTCCCCCCGCTAGAGAAGGA
TCTCAAAGAACTTCAGAAACTTCTACGGATGCAAAGGAGA
CAGTAAGTCACAAACACACATACATATCTGATCCATCATG
CTGAATTTCATTAGTCTGAAATGATGAATTCCTCCTCAGC
AACTGATCTCTGGGAAGTTCTGGTATGAGAATTCATTGTA
GAGACATTAATCATATTCGCACAATAATGTCTCTTATTCA
TGGTCTTAAAAAATACAAGATGAGAGCTGGAAAAAGACTC
TCATCTACATTTTGAATAAATCATACTTTTAAAGAGA

Related Transcripts

Transcripts related to rapgef5b

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	rapgef5b-203	Ensembl	837 nt
mRNA	rapgef5b-201 (1) Ensembl	Ensembl	3,730 nt	Select Tool
mRNA	rapgef5b-202 (1) Ensembl	Ensembl	1,150 nt	Select Tool
mRNA	rapgef5b-205 (1) Ensembl	Ensembl	2,822 nt	Select Tool ZFIN BLAST
ncRNA	rapgef5b-003 (1) Ensembl	Ensembl	812 nt	Select Tool

Segment Relationships

Protein Products

No data available

Supporting Sequences

Citations