Transcript

rapgef5b-003

ID

ZDB-TSCRIPT-090929-18094

Name

rapgef5b-003 Nomenclature History

Previous Names

rapgef5b-004
ottdart00000037693
zgc:165655-003

Transcript Type

ncRNA

Annotation Status

retained intron

Annotation Method

Ensembl

Associated With Genes

rapgef5b (1)

Strain

Non Reference Strain

Genome Resources

RNA Central

None

Note

None

Sequence

ENSDART00000140727 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|ENSDART00000140727.2|gene_biotype:protein_coding|ENSDARG00000074307.6 transcript_biotype:retained_intron gene_symbol:rapgef5b cdna chromosome:GRCz11:16:19079774:19100325:1
GTTCACTCTTTCTCCCTCAGGCAACACTGTCTCTGAGTCT
TCACTTTTTAAAGCTTTCCTCAGGACTACCGTGACCGTCT
CACAGTCAGGGGCTTTCAGTCTCACCTGAGCGAAGACACG
GGCTGTCAAACTGATGGCGTGGGATTGTGGCCTGAGATTT
GTGTTTTCTGTGTCTCCTGCACTGCAGCAGGTCCCTGGAG
CGGGGACACGAGACCGAGAGGAGATCAGCCGTTTGGAGAT
GGTCCAGAGACTGGCCAAGGATGGATGCCGACTTCTGCAC
AGCCCGCTGAGAGTCAATGAAAGGCCTGCTGAGCCCCTCG
GTGACGCAGCAGTCCGTGTGTGCGAGCGGAGCCACGAGGT
GCTGCTTCCTAAGAGGACGACGTCACTCAAATCTCCCTCC
TCTTCCTCCTCCTCCTGGAGCCGGAGGTAAGCAGCAGCTA
CACACACACATGCGAACCGCGCTTGACAGCACACACACCC
ATTCTCTCTCTCTCTCTCTCGCTCTCTCGCTCTCACTTCT
CACTCTTGTCATTCCGTCTTGGATGTAATCTGTCCAGCTT
TGGCTCTTTGTCACTTTATTTTTATCTCTCATCTCCCTGA
AGTCAATTTCTCACTCACACACACACACACTCATCCGAAG
ATGTGCTGCATTGCCGTGCGCTCTTTTCTATGGAGCTGTT
TGGTTTCCGAGGGCTCATAAGTCAGAAGCTCCAGAGTGGT
TCCTCCTGGTAAGCTGGCACTGATGCCAACATGGGCAGCA
GGCGTGCAGTGGACCCGCACCTGGACGGCAGGTTGATGCC
AGCCGCTCTGGT

OTTDART00000037693 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|OTTDART00000037693|OTTDARG00000033460|ZDB-GENE-061215-2 rapgef5b|no_translation DKEY-233K19.1-003 LG_none CR391912.9,CR936240.10 Danio rerio protein_coding NOVEL, 812 bp
GTTCACTCTTTCTCCCTCAGGCAACACTGTCTCTGAGTCT
TCACTTTTTAAAGCTTTCCTCAGGACTACCGTGACCGTCT
CACAGTCAGGGGCTTTCAGTCTCACCTGAGCGAAGACACG
GGCTGTCAAACTGATGGCGTGGGATTGTGGCCTGAGATTT
GTGTTTTCTGTGTCTCCTGCACTGCAGCAGGTCCCTGGAG
CGGGGACACGAGACCGAGAGGAGATCAGCCGTTTGGAGAT
GGTCCAGAGACTGGCCAAGGATGGATGCCGACTTCTGCAC
AGCCCGCTGAGAGTCAATGAAAGGCCTGCTGAGCCCCTCG
GTGACGCAGCAGTCCGTGTGTGCGAGCGGAGCCACGAGGT
GCTGCTTCCTAAGAGGACGACGTCACTCAAATCTCCCTCC
TCTTCCTCCTCCTCCTGGAGCCGGAGGTAAGCAGCAGCTA
CACACACACATGCGAACCGCGCTTGACAGCACACACACCC
ATTCTCTCTCTCTCTCTCTCGCTCTCTCGCTCTCACTTCT
CACTCTTGTCATTCCGTCTTGGATGTAATCTGTCCAGCTT
TGGCTCTTTGTCACTTTATTTTTATCTCTCATCTCCCTGA
AGTCAATTTCTCACTCACACACACACACACTCATCCGAAG
ATGTGCTGCATTGCCGTGCGCTCTTTTCTATGGAGCTGTT
TGGTTTCCGAGGGCTCATAAGTCAGAAGCTCCAGAGTGGT
TCCTCCTGGTAAGCTGGCACTGATGCCAACATGGGCAGCA
GGCGTGCAGTGGACCCGCACCTGGACGGCAGGTTGATGCC
AGCCGCTCTGGT

Related Transcripts

Transcripts related to rapgef5b

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	rapgef5b-203 (1) Ensembl	Ensembl	837 nt	Select Tool
mRNA	rapgef5b-201 (1) Ensembl	Ensembl	3,730 nt	Select Tool
mRNA	rapgef5b-202 (1) Ensembl	Ensembl	1,150 nt	Select Tool
mRNA	rapgef5b-205 (1) Ensembl	Ensembl	2,822 nt	Select Tool ZFIN BLAST
ncRNA	rapgef5b-003	Ensembl	812 nt

Segment Relationships

Protein Products

No data available

Supporting Sequences

Citations