Gene

cpeb1b

ID
ZDB-GENE-990927-1
Name
cytoplasmic polyadenylation element binding protein 1b
Symbol
cpeb1b Nomenclature History
Previous Names
  • cepb1b
  • fd15c06
  • wu:fd15c06 (1)
  • zorba
Type
protein_coding_gene
Location
Chr: 7 Mapping Details/Browsers
Description
Exhibits RNA binding activity. Predicted to be involved in cellular response to hypoxia; cellular response to organonitrogen compound; and regulation of gene expression. Localizes to protein-containing complex. Is expressed in blastomere; germ line cell; nervous system; and notochord. Orthologous to human CPEB1 (cytoplasmic polyadenylation element binding protein 1).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
9 figures from 3 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With cpeb1b Human Ortholog
No data available
Associated With cpeb1b Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR000504 RNA recognition motif domain
Domain IPR032292 Cytoplasmic polyadenylation element-binding protein 1, N-terminal
Domain IPR032296 Cytoplasmic polyadenylation element-binding protein, ZZ domain
Domain IPR034977 CPEB-1, RNA recognition motif 1
Family IPR034819 Cytoplasmic polyadenylation element-binding protein
Homologous_superfamily IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily IPR035979 RNA-binding domain superfamily
Homologous_superfamily IPR038446 CEBP, ZZ domain superfamily
Domain Details Per Protein
Protein Length CEBP, ZZ domain superfamily CPEB-1, RNA recognition motif 1 Cytoplasmic polyadenylation element-binding protein Cytoplasmic polyadenylation element-binding protein 1, N-terminal Cytoplasmic polyadenylation element-binding protein, ZZ domain Nucleotide-binding alpha-beta plait domain superfamily RNA-binding domain superfamily RNA recognition motif domain
UniProtKB:Q9YGX5 559
UniProtKB:A0A8M9Q7I0 554
UniProtKB:A2CE67 559
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA cpeb1b-201 (1) Ensembl 663 nt
mRNA cpeb1b-202 (1) Ensembl 2,912 nt
ncRNA cpeb1b-003 (1) Ensembl 965 nt
ncRNA cpeb1b-004 (1) Ensembl 763 nt
Interactions and Pathways
No data available
Antibodies
Name Type Antigen Genes Isotype Host Organism Assay Source Citations
Ab1-cpeb1b polyclonal Rabbit
3
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations