Gene

itga10

ID

ZDB-GENE-100922-54

Name

integrin, alpha 10

Symbol

itga10 Nomenclature History

Previous Names

si:dkey-237p10.1 (1)

Type

protein_coding_gene

Location

Chr: 16 Mapping Details/Browsers

Description

Predicted to be involved in cell adhesion and integrin-mediated signaling pathway. Predicted to localize to integrin complex. Orthologous to human ITGA10 (integrin subunit alpha 10).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

3 figures from 3 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: 1 Figure from Huo et al., 2018
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With itga10 Human Ortholog

No data available

Associated With itga10 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR018184	Integrin alpha chain, C-terminal cytoplasmic region, conserved site
Domain	IPR002035	von Willebrand factor, type A
Domain	IPR013649	Integrin alpha, first immunoglubulin-like domain
Domain	IPR048285	Integrin alpha, second immunoglobulin-like domain
Domain	IPR048286	Integrin alpha, third immunoglobulin-like domain
Family	IPR000413	Integrin alpha chain
Homologous_superfamily	IPR028994	Integrin alpha, N-terminal
Homologous_superfamily	IPR032695	Integrin domain superfamily
Homologous_superfamily	IPR036465	von Willebrand factor A-like domain superfamily
Repeat	IPR013517	FG-GAP repeat
Repeat	IPR013519	Integrin alpha beta-propellor

Domain Details Per Protein

Protein	Length	FG-GAP repeat	Integrin alpha beta-propellor	Integrin alpha chain	Integrin alpha chain, C-terminal cytoplasmic region, conserved site	Integrin alpha, first immunoglubulin-like domain	Integrin alpha, N-terminal	Integrin alpha, second immunoglobulin-like domain	Integrin alpha, third immunoglobulin-like domain	Integrin domain superfamily	von Willebrand factor A-like domain superfamily	von Willebrand factor, type A
UniProtKB:A0A8M1RMK2 InterPro	1170

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	itga10-201 (1) Ensembl	Ensembl	7,808 nt	Select Tool ZFIN BLAST
mRNA	itga10-202 (1) Ensembl	Ensembl	4,494 nt	Select Tool ZFIN BLAST
mRNA	itga10-203 (1) Ensembl	Ensembl	7,886 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations