Gene

tdrd1

ID
ZDB-GENE-070803-1
Name
tudor domain containing 1
Symbol
tdrd1 Nomenclature History
Previous Names
  • im:7155161 (1)
Type
protein_coding_gene
Location
Chr: 12 Mapping Details/Browsers
Description
Exhibits piRNA binding activity. Involved in P granule organization. Predicted to localize to pi-body. Is expressed in oocyte stage I; oocyte stage II; primordial germ cell; and testis. Orthologous to human TDRD1 (tudor domain containing 1).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
12 figures from 5 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
2 figures from Huang et al., 2011
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With tdrd1 Human Ortholog
No data available
Associated With tdrd1 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR002893 Zinc finger, MYND-type
Domain IPR002999 Tudor domain
Domain IPR047376 Tudor domain-containing protein 1, first Tudor domain
Domain IPR047377 Tudor domain-containing protein 1, second Tudor domain
Domain IPR047378 Tudor domain-containing protein 1, third Tudor domain
Family IPR050621 Tudor domain-containing
Homologous_superfamily IPR035437 SNase-like, OB-fold superfamily
Domain Details Per Protein
Protein Length SNase-like, OB-fold superfamily Tudor domain Tudor domain-containing Tudor domain-containing protein 1, first Tudor domain Tudor domain-containing protein 1, second Tudor domain Tudor domain-containing protein 1, third Tudor domain Zinc finger, MYND-type
UniProtKB:Q58EK5 1175
UniProtKB:F1Q7S6 1176
UniProtKB:A0A8M9QEB2 1201
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA tdrd1-201 (1) Ensembl 714 nt
mRNA tdrd1-202 (1) Ensembl 4,166 nt
mRNA tdrd1-203 (1) Ensembl 5,887 nt
mRNA tdrd1-204 (1) Ensembl 6,096 nt
Interactions and Pathways
No data available
Antibodies
Name Type Antigen Genes Isotype Host Organism Assay Source Citations
Ab1-tdrd1 polyclonal Rabbit
  • IHC
  • WB
2
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations