Gene

cldnk

ID

ZDB-GENE-040801-201

Name

claudin k

Symbol

cldnk Nomenclature History

Previous Names

claudin 31
cldn31a (1)
zgc:91878

Type

protein_coding_gene

Location

Chr: 3 Mapping Details/Browsers

Description

Predicted to have structural molecule activity. Predicted to localize to bicellular tight junction; integral component of membrane; and plasma membrane. Is expressed in nervous system. Orthologous to human CLDN17 (claudin 17).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

26 figures from 10 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:91878 (5 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With cldnk Human Ortholog

No data available

Associated With cldnk Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR017974	Claudin, conserved site
Family	IPR004031	PMP-22/EMP/MP20/Claudin
Family	IPR006187	Claudin

Domain Details Per Protein

Protein	Length	Claudin	Claudin, conserved site	PMP-22/EMP/MP20/Claudin
UniProtKB:Q6DBT9 InterPro	216

Transcripts

Genome Browsers

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	cldnk-201 (1) Ensembl	Ensembl		1,729 nt	Select Tool ZFIN BLAST
mRNA	cldnk-202 (1) Ensembl	Ensembl		682 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

Name	Type	Antigen Genes	Isotype	Host Organism	Assay	Source	Citations
Ab1-cldnk	polyclonal	cldnk		Rabbit	IHC WB		2
Ab2-cldnk	monoclonal	cldnk	IgG2a	Rat	IHC WB		3

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations