Gene

rbm39a

ID

ZDB-GENE-040426-2852

Name

RNA binding motif protein 39a

Symbol

rbm39a Nomenclature History

Previous Names

rbm39 (1)
rnpc2 (1)
zgc:55780

Type

protein_coding_gene

Location

Chr: 11 Mapping Details/Browsers

Description

Predicted to enable U1 snRNP binding activity. Predicted to act upstream of or within mRNA processing. Predicted to be located in nucleus. Orthologous to human RBM39 (RNA binding motif protein 39).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

2 figures from 2 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:55780 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With rbm39a Human Ortholog

No data available

Associated With rbm39a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000504	RNA recognition motif domain
Domain	IPR029123	Splicing factor RBM39, linker
Family	IPR006509	Splicing factor, RBM39-like
Homologous_superfamily	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily	IPR035979	RNA-binding domain superfamily

Domain Details Per Protein

Protein	Length	Nucleotide-binding alpha-beta plait domain superfamily	RNA-binding domain superfamily	RNA recognition motif domain	Splicing factor, RBM39-like	Splicing factor RBM39, linker
UniProtKB:A0A8M3B422 InterPro	278
UniProtKB:Q803H1 InterPro	523
UniProtKB:A0A8M9QLK0 InterPro	370
UniProtKB:A0A8M2BGK8 InterPro	508

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	rbm39a-209 (1) Ensembl	Ensembl	2,591 nt	Select Tool ZFIN BLAST
mRNA	rbm39a-201 (1) Ensembl	Ensembl	2,366 nt	Select Tool ZFIN BLAST
mRNA	rbm39a-202 (1) Ensembl	Ensembl	546 nt	Select Tool ZFIN BLAST
mRNA	rbm39a-203 (1) Ensembl	Ensembl	790 nt	Select Tool ZFIN BLAST
mRNA	rbm39a-205 (1) Ensembl	Ensembl	2,280 nt	Select Tool ZFIN BLAST
mRNA	rbm39a-213 (1) Ensembl	Ensembl	5,601 nt	Select Tool ZFIN BLAST
mRNA	rbm39a-214 (1) Ensembl	Ensembl	1,604 nt	Select Tool ZFIN BLAST
ncRNA	rbm39a-002 (1) Ensembl	Ensembl	2,848 nt	Select Tool ZFIN BLAST
ncRNA	rbm39a-003 (1) Ensembl	Ensembl	817 nt	Select Tool ZFIN BLAST
ncRNA	rbm39a-005 (1) Ensembl	Ensembl	1,818 nt	Select Tool ZFIN BLAST
ncRNA	rbm39a-007 (1) Ensembl	Ensembl	826 nt	Select Tool ZFIN BLAST
ncRNA	rbm39a-008 (1) Ensembl	Ensembl	843 nt	Select Tool ZFIN BLAST
ncRNA	rbm39a-010 (1) Ensembl	Ensembl	769 nt	Select Tool ZFIN BLAST
ncRNA	rbm39a-011 (1) Ensembl	Ensembl	720 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations