Gene

lmo7a

ID

ZDB-GENE-030219-74

Name

LIM domain 7a

Symbol

lmo7a Nomenclature History

Previous Names

lmo7 (1)
fc03h03
id:ibd5155 (1)
si:dkey-57a22.10 (1)
wu:fc03h03 (1)

Type

protein_coding_gene

Location

Chr: 9 Mapping Details/Browsers

Description

Predicted to have metal ion binding activity. Predicted to be involved in regulation of cell adhesion and regulation of signaling. Is expressed in several structures, including brain; digestive system; eye; immature eye; and pericardial region. Orthologous to human LMO7 (LIM domain 7).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

4 figures from 2 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With lmo7a Human Ortholog

No data available

Associated With lmo7a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR001478	PDZ domain
Domain	IPR001715	Calponin homology domain
Domain	IPR001781	Zinc finger, LIM-type
Domain	IPR031865	Domain of unknown function DUF4757
Domain	IPR041489	PDZ domain 6
Family	IPR003096	Smooth muscle protein/calponin
Family	IPR029978	LIM domain only protein 7
Homologous_superfamily	IPR036034	PDZ superfamily
Homologous_superfamily	IPR036872	CH domain superfamily

Domain Details Per Protein

Protein	Length	Calponin homology domain	CH domain superfamily	Domain of unknown function DUF4757	LIM domain only protein 7	PDZ domain	PDZ domain 6	PDZ superfamily	Smooth muscle protein/calponin	Zinc finger, LIM-type
UniProtKB:A0A8M9QJM0 InterPro	1398
UniProtKB:A0A8M9PS20 InterPro	1661
UniProtKB:A0A8M9Q4J8 InterPro	1868
UniProtKB:A0A8M9PS15 InterPro	1874
UniProtKB:A0A8M9Q4K1 InterPro	1648
UniProtKB:A0A8M9QFD0 InterPro	1700
UniProtKB:A0A8M9QAP1 InterPro	1840
UniProtKB:B0UYM8 InterPro	1826
UniProtKB:A0A8M9QAP5 InterPro	1408
UniProtKB:A0A8M9QJL5 InterPro	1821
UniProtKB:A0A8M3B5K4 InterPro	1384
UniProtKB:A0A8M9QFC6 InterPro	1876
UniProtKB:A0A8M3B2L7 InterPro	1862
UniProtKB:A0A8M9QJL3 InterPro	1893
UniProtKB:A0A8M3AVY5 InterPro	1879

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	lmo7a-203 (1) Ensembl	Ensembl	625 nt	Select Tool ZFIN BLAST
mRNA	lmo7a-201 (1) Ensembl	Ensembl	6,323 nt	Select Tool ZFIN BLAST
mRNA	lmo7a-202 (1) Ensembl	Ensembl	812 nt	Select Tool ZFIN BLAST
mRNA	lmo7a-204 (1) Ensembl	Ensembl	1,052 nt	Select Tool ZFIN BLAST
mRNA	lmo7a-210 (1) Ensembl	Ensembl	663 nt	Select Tool ZFIN BLAST
mRNA	lmo7a-212 (1) Ensembl	Ensembl	754 nt	Select Tool ZFIN BLAST
ncRNA	lmo7a-003 (1) Ensembl	Ensembl	962 nt	Select Tool ZFIN BLAST
ncRNA	lmo7a-004 (1) Ensembl	Ensembl	914 nt	Select Tool ZFIN BLAST
ncRNA	lmo7a-005 (1) Ensembl	Ensembl	733 nt	Select Tool ZFIN BLAST
ncRNA	lmo7a-007 (1) Ensembl	Ensembl	824 nt	Select Tool ZFIN BLAST
ncRNA	lmo7a-008 (1) Ensembl	Ensembl	853 nt	(2 sequences)
ncRNA	lmo7a-012 (1) Ensembl	Ensembl	895 nt	Select Tool ZFIN BLAST
ncRNA	lmo7a-013 (1) Ensembl	Ensembl	853 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations