Gene

pcdh19

ID
ZDB-GENE-030131-4218
Name
protocadherin 19
Symbol
pcdh19 Nomenclature History
Previous Names
  • fc83e05
  • wu:fc83e05
Type
protein_coding_gene
Location
Chr: 14 Mapping Details/Browsers
Description
Exhibits calcium ion binding activity and identical protein binding activity. Involved in brain morphogenesis; neural tube formation; and visual perception. Localizes to integral component of membrane. Human ortholog(s) of this gene implicated in early infantile epileptic encephalopathy 9. Is expressed in several structures, including brain; eye; immature eye; posterior neural keel; and spinal cord. Orthologous to human PCDH19 (protocadherin 19).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
25 figures from 7 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
14 figures from 4 publications
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With pcdh19 Human Ortholog
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
developmental and epileptic encephalopathy 9 Alliance Developmental and epileptic encephalopathy 9 300088
Associated With pcdh19 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Conserved_site IPR020894 Cadherin conserved site
Domain IPR002126 Cadherin-like
Domain IPR013164 Cadherin, N-terminal
Family IPR050174 Protocadherin/Cadherin-related Cell Adhesion
Homologous_superfamily IPR015919 Cadherin-like superfamily
Domain Details Per Protein
Protein Length Cadherin conserved site Cadherin-like Cadherin-like superfamily Cadherin, N-terminal Protocadherin/Cadherin-related Cell Adhesion
UniProtKB:A1L1W7 1078
UniProtKB:A0A8M3AP82 1023
UniProtKB:A0A2R8QME5 1094
UniProtKB:F8W3X3 1088
UniProtKB:A0A8M1NJM2 1088
UniProtKB:A0A9K3Y6L2 1083
UniProtKB:A0A9U5BCE3 1088
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA pcdh19-201 (1) Ensembl 6,346 nt
mRNA pcdh19-202 (1) Ensembl 3,054 nt
mRNA pcdh19-203 (1) Ensembl 7,503 nt
Interactions and Pathways
No data available
Antibodies
Name Type Antigen Genes Isotype Host Organism Assay Source Citations
Ab1-pcdh19 polyclonal Rabbit
  • WB
1
Plasmids
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations