Gene

pdcd11

ID

ZDB-GENE-030131-4076

Name

programmed cell death 11

Symbol

pdcd11 Nomenclature History

Previous Names

cb680 (1)
im:7148359
sb:cb680
wu:fc68c10

Type

protein_coding_gene

Location

Chr: 1 Mapping Details/Browsers

Description

Predicted to have RNA binding activity. Predicted to be involved in mRNA processing. Predicted to localize to nucleolus and small-subunit processome. Is expressed in several structures, including alar plate midbrain region; head; midbrain; musculature system; and segmental plate. Orthologous to human PDCD11 (programmed cell death 11).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

15 figures from 3 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

cb680 (18 images)
IMAGE:7148359 (11 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: 4 figures from Yang et al., 2020
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With pdcd11 Human Ortholog

No data available

Associated With pdcd11 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR003029	S1 domain
Domain	IPR008847	Suppressor of forked
Domain	IPR048058	rRNA biogenesis protein RRP5, S1 domain, eleventh repeat
Domain	IPR048059	rRNA biogenesis protein RRP5, S1 domain, first repeat
Family	IPR045209	rRNA biogenesis protein Rrp5
Homologous_superfamily	IPR011990	Tetratricopeptide-like helical domain superfamily
Homologous_superfamily	IPR012340	Nucleic acid-binding, OB-fold
Repeat	IPR002885	Pentatricopeptide repeat
Repeat	IPR003107	HAT (Half-A-TPR) repeat