Gene

ctdsp2

ID

ZDB-GENE-030131-184

Name

CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2

Symbol

ctdsp2 Nomenclature History

Previous Names

fb16c04
wu:fb16c04
zgc:77714 (1)

Type

protein_coding_gene

Location

Chr: 23 Mapping Details/Browsers

Description

Predicted to have RNA polymerase II CTD heptapeptide repeat phosphatase activity. Involved in neuron differentiation. Is expressed in brain; eye; fin; integument; and muscle. Orthologous to human CTDSP2 (CTD small phosphatase 2).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

3 figures from 2 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:77714 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With ctdsp2 Human Ortholog

No data available

Associated With ctdsp2 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR004274	FCP1 homology domain
Domain	IPR011948	Dullard phosphatase domain, eukaryotic
Family	IPR040078	CTD small RNA polymerase II polypeptide A phosphatase-like
Family	IPR050365	Mitochondrial import inner membrane translocase subunit TIM50
Homologous_superfamily	IPR023214	HAD superfamily
Homologous_superfamily	IPR036412	HAD-like superfamily

Domain Details Per Protein

Protein	Length	CTD small RNA polymerase II polypeptide A phosphatase-like	Dullard phosphatase domain, eukaryotic	FCP1 homology domain	HAD-like superfamily	HAD superfamily	Mitochondrial import inner membrane translocase subunit TIM50
UniProtKB:A0A8M9PSV9 InterPro	196
UniProtKB:Q6P3I6 InterPro	258
UniProtKB:A0A8M2B916 InterPro	157
UniProtKB:A0A8M3ANJ8 InterPro	155

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	ctdsp2-201 (1) Ensembl	Ensembl	2,138 nt	Select Tool ZFIN BLAST
ncRNA	ctdsp2-002 (1) Ensembl	Ensembl	668 nt	Select Tool ZFIN BLAST
ncRNA	ctdsp2-003 (1) Ensembl	Ensembl	863 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

Name	Type	Antigen Genes	Isotype	Host Organism	Assay	Source	Citations
Ab1-ctdsp2	polyclonal	ctdsp2		Rabbit	WB		1

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations