ZFIN ID: ZDB-GENE-990715-6

Mapping Details

Gene Name: SRY-box transcription factor 21a
Symbol: sox21a
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN JBrowse 6 7,414,215 - 7,415,343 GRCz11
Ensembl 6 7,414,215 - 7,415,343 GRCz11
Vega 6 7,257,046 - 7,258,174 GRCv10
NCBI Map Viewer 6 7,414,273 - 7,415,343 GRCz11
UCSC 6 - GRCz11
Mapped Clones containing sox21a
BUSM1-202L16 Chr: 6 Details
CH211-241A17 Chr: 6 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Citations
sa10235 6 7,415,171 GRCz11 Busch-Nentwich et al., 2013
6 7,258,002 GRCz10 Busch-Nentwich et al., 2013
6 7,331,986 Zv9 Busch-Nentwich et al., 2013

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
6 45.7 cM sox25 Mother of Pearl (MOP) Postlethwait, John H. Data
6 150.04 cR sox25 Loeb/NIH/5000/4000 (LN54) Dawid, Igor B. Data
6 442.0 cR sox21 Goodfellow T51 (T51) Geisler, Robert Data
6 25.5 cM sox25 Heat Shock (HS) Woods, Ian G. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
z17212 SSLP 6 Sekimizu et al., 2004 Sekimizu et al. (2004, Development. 131(11):2521-2532) mapped igu to LG6 using a mixture of EST and SSLP markers.
z6624 SSLP 6 Sekimizu et al., 2004 Sekimizu et al. (2004, Development. 131(11):2521-2532) mapped igu to LG6 using a mixture of EST and SSLP markers.
unp172 STS 6 Sekimizu et al., 2004 Sekimizu et al. (2004, Development. 131(11):2521-2532) mapped igu to LG6 using a mixture of EST and SSLP markers.
ts294e Feature 6 0.23 cM Sekimizu et al., 2004 Sekimizu et al. (2004, Development. 131(11):2521-2532) mapped igu to LG6 using a mixture of EST and SSLP markers.

OTHER MAPPING INFORMATION: No data available