ZFIN ID: ZDB-GENE-021226-3

Mapping Details

Gene Name:	laminin, gamma 1
Symbol:	lamc1

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN JBrowse	2	35,880,600 - 35,979,178	GRCz11
Ensembl	2	35,880,600 - 35,979,178	GRCz11
Vega	2	35,898,143 - 35,996,721	GRCv10
NCBI Map Viewer	2	35,880,600 - 35,979,095	GRCz11
UCSC	2	-	GRCz11

Mapped Clones containing lamc1
CH211-194I4	Chr: 2 Details
DKEY-161L11	Chr: 2 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Citations
hi1193Tg	2	35,924,004 - 35,924,005	GRCz11	ZFIN Curated Data
hi2557Tg	2	35,880,992 - 35,880,993	GRCz11	ZFIN Curated Data
hi3890Tg	2	35,900,512 - 35,900,513	GRCz11	ZFIN Curated Data
hi4131Tg	2	35,933,682 - 35,933,683	GRCz11	ZFIN Curated Data
m86	2	35,939,841	GRCz11	Parsons et al., 2002
m466	2	35,881,007	GRCz11	Parsons et al., 2002
sa379	2	35,954,454	GRCz11	Busch-Nentwich et al., 2013
	2	35,971,997	GRCz10	Busch-Nentwich et al., 2013
	2	35,675,287	Zv9	Busch-Nentwich et al., 2013
sa9866	2	35,971,297	GRCz11	Busch-Nentwich et al., 2013
	2	35,988,840	GRCz10	Busch-Nentwich et al., 2013
	2	35,692,130	Zv9	Busch-Nentwich et al., 2013
sa19814	2	35,955,923	GRCz11	Busch-Nentwich et al., 2013
	2	35,973,466	GRCz10	Busch-Nentwich et al., 2013
	2	35,676,756	Zv9	Busch-Nentwich et al., 2013
sa30600	2	35,967,988	GRCz11	Busch-Nentwich et al., 2013
	2	35,985,531	GRCz10	Busch-Nentwich et al., 2013
	2	35,688,821	Zv9	Busch-Nentwich et al., 2013
sa39876	2	35,965,952	GRCz11	Busch-Nentwich et al., 2013
	2	35,983,495	GRCz10	Busch-Nentwich et al., 2013
	2	35,686,785	Zv9	Busch-Nentwich et al., 2013
la023638Tg	2	35,602,191 - 35,602,201	Zv9
la023639Tg	2	35,648,924 - 35,648,934	Zv9
la028800Tg	2	35,646,031 - 35,646,041	Zv9
la028801Tg	2	35,648,212 - 35,648,222	Zv9

GENETIC MAPPING PANELS: No data available

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person	Comments
z11023	SSLP	2	1.6 cM	Parsons et al., 2002	Parsons, et al. (2002. Dev 129:3137-3146.) report using half tetrad analysis to map lamc1 to LG2. They localized lamc1 to a 3.4 cM interval between z11023 and z7632 on the MGH mapping panel. The elavl1 gene is within this interval and was used as a starting point for a chromosome walk. lamc1 was found to be on YAC 148F11, approximately 1.6 cM from z11023 and approximately 1.8 cM from z7632.
z7632	SSLP	2	1.8 cM	Parsons et al., 2002	Parsons, et al. (2002. Dev 129:3137-3146.) report using half tetrad analysis to map lamc1 to LG2. They localized lamc1 to a 3.4 cM interval between z11023 and z7632 on the MGH mapping panel. The elavl1 gene is within this interval and was used as a starting point for a chromosome walk. lamc1 was found to be on YAC 148F11, approximately 1.6 cM from z11023 and approximately 1.8 cM from z7632.
elavl1a	GENE	2		Parsons et al., 2002	Parsons, et al. (2002. Dev 129:3137-3146.) report using half tetrad analysis to map lamc1 to LG2. They localized lamc1 to a 3.4 cM interval between z11023 and z7632 on the MGH mapping panel. The elavl1 gene is within this interval and was used as a starting point for a chromosome walk. lamc1 was found to be on YAC 148F11, approximately 1.6 cM from z11023 and approximately 1.8 cM from z7632.

Genomic Feature ti263a is an allele of lamc1

Chr	Location	Mapped As	Panel	Mapped By	Scoring
2	48.8 cM	ti263a	Boston MGH Cross (MGH)	Geisler, Robert	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

Genomic Feature m253 is an allele of lamc1