ZFIN ID: ZDB-GENE-980526-399

Mapping Details

Gene Name: paired box 9
Symbol: pax9
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN JBrowse 17 38,236,469 - 38,291,065 GRCz11
Ensembl 17 38,236,469 - 38,291,065 GRCz11
Vega 17 38,288,884 - 38,343,480 GRCv10
NCBI Map Viewer 17 38,236,469 - 38,244,117 GRCz11
UCSC 17 - GRCz11
Mapped Clones containing pax9
DKEY-34N18 Chr: 17 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Citations
zf3502 17 38,243,491 - 38,243,494 GRCz11 Pak et al., 2020
zf3503 17 38,243,493 - 38,243,505 GRCz11 Pak et al., 2020

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
17 117.2 cM pax9 Mother of Pearl (MOP) Postlethwait, John H. Data
17 3505.0 cR pax9 Goodfellow T51 (T51) Geisler, Robert Data
17 93.7 cM pax9 Heat Shock (HS) Woods, Ian G. Data
17 75.35 cM pax9 Gates et al (GAT) Talbot, William S. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.

OTHER MAPPING INFORMATION
Primer Sets:
Strain Bandsize Restriction Enzyme Annealing Temperature [C]
SJD 453 NlaIII 36.0
Forward Primer ACATCGGTGCACTTGGTCTGGTAG
Reverse Primer TTTTGCCTGAATGAATGAATGCTC
Genomic Feature zf3503 is an allele of pax9