ZFIN ID: ZDB-GENE-001212-1

Mapping Details

Gene Name: ATPase Na+/K+ transporting subunit alpha 1a, tandem duplicate 1
Symbol: atp1a1a.1
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN JBrowse 1 1,712,140 - 1,731,564 GRCz11
Ensembl 1 1,712,140 - 1,731,564 GRCz11
Vega 1 1,564,346 - 1,645,577 GRCv10
NCBI Map Viewer 1 1,712,169 - 1,731,564 GRCz11
UCSC 1 - GRCz11
Mapped Clones containing atp1a1a.1
DKEY-208K14 Chr: 1 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Citations
la1 1 1,723,701 - 1,723,759 GRCz11 Shu et al., 2003
m883 1 1,721,783 GRCz11 ZFIN Curated Data
mw15b 1 1,723,701 - 1,723,763 GRCz11 Yuan et al., 2004
sa12184 1 1,723,509 GRCz11 Busch-Nentwich et al., 2013
1 1,575,715 GRCz10 Busch-Nentwich et al., 2013
1 1,480,295 Zv9 Busch-Nentwich et al., 2013
sa13646 1 1,717,841 GRCz11 Busch-Nentwich et al., 2013
1 1,570,047 GRCz10 Busch-Nentwich et al., 2013
1 1,474,627 Zv9 Busch-Nentwich et al., 2013
sa15598 1 1,721,783 GRCz11 Busch-Nentwich et al., 2013
1 1,573,989 GRCz10 Busch-Nentwich et al., 2013
1 1,478,569 Zv9 Busch-Nentwich et al., 2013
sa19398 1 1,718,882 GRCz11 Busch-Nentwich et al., 2013
1 1,571,088 GRCz10 Busch-Nentwich et al., 2013
1 1,475,668 Zv9 Busch-Nentwich et al., 2013
sa31185 1 1,712,358 GRCz11 Busch-Nentwich et al., 2013
1 1,564,564 GRCz10 Busch-Nentwich et al., 2013
1 1,469,144 Zv9 Busch-Nentwich et al., 2013
sa38236 1 1,724,421 GRCz11 Busch-Nentwich et al., 2013
1 1,576,627 GRCz10 Busch-Nentwich et al., 2013
1 1,481,207 Zv9 Busch-Nentwich et al., 2013
tx218 1 1,723,677 GRCz11 Pott et al., 2018
la028094Tg 1 1,469,800 - 1,469,810 Zv9

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
1 0.0 cM atp1a1a_1 Heat Shock (HS) Woods, Ian G. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
z9382 SSLP 1 Rajarao et al., 2001 Rajarao, et al. (2001. Genome Res 11:1211-1220.) report mapping atp1a1a.1 to  ...
z9394 SSLP 1 Rajarao et al., 2001 Rajarao, et al. (2001. Genome Res 11:1211-1220.) report mapping atp1a1a.1 to  ...

OTHER MAPPING INFORMATION
Chr 1 Rajarao et al., 2001 Rajarao, et al. (2001. Genome Res 11:1211-1220.) report mapping atp1a1a.1 to LG01 between z9382 and  ...
Markers Encoded by atp1a1a.1
fa03c03 Chr: 1 Details
Genomic Feature to273a is an allele of atp1a1a.1
Chr Location Mapped As Panel Mapped By Scoring
1 8.5 cM to273a Boston MGH Cross (MGH) Geisler, Robert Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
Genomic Feature la1 is an allele of atp1a1a.1
Marker Type Chr Distance Publication / Person Comments
z6384 SSLP 1 0.12 cM Shu et al., 2003 Shu et al. (2003, Development 130(25):6165-6173) mapped heart and mind (had) to LG1 close to SSLP z6384 using a meiotic mapping panel.
Genomic Feature m883 is an allele of atp1a1a.1
Marker Type Chr Distance Publication / Person Comments
z6384 SSLP 1 Ellertsdottir et al., 2006 Fine mapping with a single embryo panel representing 246 meioses revealed no  ...
z12036 SSLP 1 Ellertsdottir et al., 2006 Fine mapping with a single embryo panel representing 246 meioses revealed no  ...
Genomic Feature m883 is an allele of atp1a1a.1
Chr 1 Ellertsdottir et al., 2006 Fine mapping with a single embryo panel representing 246 meioses revealed no recombination events  ...
Genomic Feature sa15598 is an allele of atp1a1a.1
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