Genomic Feature

vbc12

ID
ZDB-ALT-220110-7
Name
vbc12
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Pauli Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Variants
Variant Type
Small Deletion
Variant Location
Chr 16: 24907533 - 24907973 (GRCz11) (1) Details
Nucleotide change
GGTAACAGGTTTTCTAATTACCAGTCTAAACAATAACACTGTTTGAGGAAAGACCAGTTAAAGAGACTACAGTGTAAATATTAACTCTCATACACAATCCATATACTAATAGTATAAGTTATTAGCTCTTATCGTAAACTCTACCGGTACTTAGATGGCAACAAAATAAGCAGGCTCAGTTTCTTATCAAACAGTCACTGAAAACTGAGTTGTGCAAATGTGAAGCATTTTGCCTACACTTTCCACACCCTTGTTTATGAGATGCTGGTTGTTGTAAAAATGTAAACCTGTCATTTCTAGTGGTTTGACTGCAATATTGTCAGAACAAAATAATTTATCCCTAAGAAAAAACACAGAAACAATACAGAATGTTATTTTCTCTGTGAACCATTTCAAAAACAACTACTGGCTTCAGGTGATTTCTTTTTGTTCTGTAATTAA/-
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
441 bp deleted at Exon 2 - Intron 2 Splice Junction (1)
Transcript Consequence
None
Protein Consequence
None
Sequences
Flanking Sequence
TAAATAGGACAAATAAGTAATGTATGGGACAAATTCTACATCTTTGTCAGTTGGGGGTGGGTCTTTCAAACCACCTGAACCCTCACGATGGTTGAAATCTAGGGACGACTATTTGGATCTGTATCAGATTTGATAGGCTACTAAAATGTTGTCACATAGCTTCATTTGAGGAAGTGTGCACATTCCCTTTTAGACACTGTAACAAAACATCTAATCATTATTAAAGTCTATTTGGCTTTATTTCATTTATGGTTAGTATAATTAGCTTCAGATAAATTTTCTTGGTCAGGGAACCTGCACTTTAGACTAGTTGCAAAAACTAAGACAGCAATAGTTAAGACATAAAAATAATTAGTCTACGTGTTTCTGTATTGTTGTTACCATTATATTGTTGTTGTTTTATCTTTTTCTCAGGGAGAGGATATGACTTGACGCTGAAGAATATTTTGATGGCTGAGATTATGCCTATAGTAGAGGAATTTGACCAGCAGCTAAATTAC
GGTAACAGGTTTTCTAATTACCAGTCTAAACAATAACACTGTTTGAGGAAAGACCAGTTAAAGAGACTACAGTGTAAATATTAACTCTCATACACAATCCATATACTAATAGTATAAGTTATTAGCTCTTATCGTAAACTCTACCGGTACTTAGATGGCAACAAAATAAGCAGGCTCAGTTTCTTATCAAACAGTCACTGAAAACTGAGTTGTGCAAATGTGAAGCATTTTGCCTACACTTTCCACACCCTTGTTTATGAGATGCTGGTTGTTGTAAAAATGTAAACCTGTCATTTCTAGTGGTTTGACTGCAATATTGTCAGAACAAAATAATTTATCCCTAAGAAAAAACACAGAAACAATACAGAATGTTATTTTCTCTGTGAACCATTTCAAAAACAACTACTGGCTTCAGGTGATTTCTTTTTGTTCTGTAATTAA/- GTTGCCGATGCGCCATTTTGAGGACGGATCTTTTACATTGAGGAGAGTGGAAACGACAGACAGAGACTGGCATGATACATCAGGCAGAGAAATCTTGATTGGAGGAGACAGATAATCTTTGACATGCACACTTTGAGTAACATTGAGATAAATGGTGCTGTCCTTCTTCCGTCTCCTCTCTTCTTTAGATACAGAGTATGAGTCCAGGTTACAGGCAGCAGCAAACAATTTCATTGCAGCGGCCTCAAGCCTGCCCAGAGGTGAGACTTACATTATAACTTCATTTCTTGTGCCTGAGAAAACATGAAACCTAGACCCGAGCCTTCTACTTCAAACCACAGCTCTCACTTTTTTCTAGTTTTATCACAATTGTCTTCTTTTTTAGAAACTGCAATCTGTAAAAATGCGTTTTTATGTTTTGATTTGTTTTGTTTGTTTGTTTTTGCAGTATCTGGATGTTTGCCCCCATGTGGTGAGTTGTGTCTATTATGAGCTGATCA
Additional Sequence
None
Fish
Supplemental Information
Genotyping protocol
None
Citations
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