Genomic Feature

ya3322

ID
ZDB-ALT-211007-1
Name
ya3322
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Giraldez Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Variants
Variant Type
Small Deletion
Variant Location
Chr 17: 27414935 - 27415157 (GRCz11) (1) Details
Nucleotide change
GGGAAAGAAGTTGAAGCCATGCTGTCCTAGGAAAGGGTTGTTCCCCAGTGCTCCAGACTGTCCAAACATGGCATCCGGGAGAAAGTGGTGCTCCCCATTGCTAAGCTGTCCATAAGAGGCCAGGTAAGGCATCGGGGGATCTCCACCTGTTGACCATGCCGCTTCATTCAGGGAATAGGTGAAGCCTATTGAGGGGCTGTAGTAACTGGGCATGTAGGAGTCG/-
Variant Notes
Deletion of 223 nt in exon 4 generated a premature stop codon predicted to  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
223 bp deleted in Exon 4 (1)
Transcript Consequence
Premature Stop (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
GGCAGGGAAGTCTGCTGTGGGGCTGCTGGTTTAGGCATATTCCCCTTGTTGTCCCATGTCCCAATATCCATGTTATGTTTTATTGGAGGTGGTGGCAGATTTGTCCCACCAAGTCCCCCCTTAGTTTTCAATTTAGGCTGTGGTTTGGCTGGCTTGCTGGCAATGTCCGCCCAAGAAGCAGTTTTCGCAGGAGCCATGGAGGCAGGAGGCATGGTTGGAGCTGTAGACACCTGACTCAATGGCCCTCCGGGAAGTCCAGAACCAACAACCTTTGGTGCCATGTCCCCTGCCCCAATTTTAAGCCCTGCCATGCCCTGATCCAAGCTATTCATCCCCACTGCCTTGTTGAGTGGCTCATTGGCTGCAAAGGGAGACTGTCCGTCAATCATTGCACCTCCTAGCGTGCTAGGGGCATAGGCGTAACTGCTGCTGTAACCTGAACTCTGTGTGGACTGTCCCTGAGAGCTGCTGTTGCCCCAAGCGGGAAAGTCAATCCCACT
GGGAAAGAAGTTGAAGCCATGCTGTCCTAGGAAAGGGTTGTTCCCCAGTGCTCCAGACTGTCCAAACATGGCATCCGGGAGAAAGTGGTGCTCCCCATTGCTAAGCTGTCCATAAGAGGCCAGGTAAGGCATCGGGGGATCTCCACCTGTTGACCATGCCGCTTCATTCAGGGAATAGGTGAAGCCTATTGAGGGGCTGTAGTAACTGGGCATGTAGGAGTCG/- GACATGGCCGTATAGGCATTGCTCTGTAAAAACAACAACATAAATTGTGATTAGTCATTATCAACTCCAGACAAGTAGGATTAGAAAGGTAATGCAACAACCTGGAAAATATTGCCAGGTGACAATTGCTCCCTGTTGTCACCTGGAAACATTTCTCCCCTTGTAGCATTAACCCTTTGAGTAAAAACTTAAGTACATTAACTGTAGATTAAAGTCAAATCAATTATCAAGATAATCTCTTGCTTTATTATTTTACTTTGTAAAAGTAAACCTGAATAAAAACTAAATAAAAAAAATTTAAATGAAATTTTCCATGTCCATTAAGGTAAATATTTTTAATTCTTTGATATGCACCCATTTTGCATAATTTTAAATATAGCAAAAAATATATCTAAAATAAAAATAACAGCAATAATATTCTATCGACAGATAATGAAATGTCTAAACTTTAAATGGTTTTAATATTCATATACATATTATAAATGTAATGTTAAAACTAC
Additional Sequence
None
Fish
Supplemental Information
Genotyping protocol
None
Citations
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