Genomic Feature

sh565

ID
ZDB-ALT-210713-6
Name
sh565
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Cunliffe Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Variants
Variant Type
Small Deletion
Variant Location
Chr 25: 22303194 - 22303458 (GRCz11) (1) Details
Nucleotide change
CCTGGGATGGTATCTTTAACCAAGGTAACAGAACGCTACAGCTGTTAAATAAAATTATTGTTTTTAATTTGCTGTTTTTTTTTCCTTGAAATCCACCTTGATTTTATATCCCATGTGAATTTTCATAGCTGACCGATGTATCCAGAATATCTACAGACAATTGCGGAAAAACCCCGAAGGTAATGGGAAATACACTGGTGTGCTGGCAAGCCTTCTAATGCTGGACAAACTGTCCATCGAGGACATAAAGGCCAGTGTCACTGAG/-
Variant Notes
This line contains a 161 bp deletion with the whole exon 5 deleted,
resulting  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
265 bp deleted (1)
Transcript Consequence
None
Protein Consequence
None
Sequences
Flanking Sequence
AGTAATATATATTAAACTCAATTTACAATAAAAGTTACAATGTTTTTATTTCTGGTGACTGAAAATCACAGTTAAAACATTGGTATTGTGTTTTGAACTTTGCATAAACCAAACATCATCACATTATAAAACAATTATGTTATCTTAATGATAGGATACTAATACTGAAATTCTAGGACTTTTTGGTACAAATTATGCTGCTGGGGTTTTGGGGTGACCAAATGGATAGTTCACCCAAATGTAAATTTCTGTTTCATTTATGTGTGGAATACTTTGCACAAACCCTACACTGCTGAGTGTTTTCTGTTTGTGTTTCTCAGCGGTGAGTGCTGTGTTGTACGGCGAGCGTTTGGGTCTGCTGTTGGACTACATTGATCCAGACTCTCAGCGATTTATCGACTGCATCACCCTCATGTTTAAGACCACCTCGCCCATGCTGTACTTACCCCCAGGCCTGCTTCGGCCTATAAGATCCAAAATCTGGAGGAACCACGTTGAAG
CCTGGGATGGTATCTTTAACCAAGGTAACAGAACGCTACAGCTGTTAAATAAAATTATTGTTTTTAATTTGCTGTTTTTTTTTCCTTGAAATCCACCTTGATTTTATATCCCATGTGAATTTTCATAGCTGACCGATGTATCCAGAATATCTACAGACAATTGCGGAAAAACCCCGAAGGTAATGGGAAATACACTGGTGTGCTGGCAAGCCTTCTAATGCTGGACAAACTGTCCATCGAGGACATAAAGGCCAGTGTCACTGAG/- CTGATGGCTGGAGGAGTGGACACGGTATGAAAATATAGAAATCCATAAATTCAAAGTTCATAAAGGACACCAATATACTTAAACACCACAATAAATGAGCTGGTGAGGTTAAAACCTGCTAAAGATGCTGGTTTGAATCTGGCTCAAAATGGACCAAGTAGAATTGAAGGGGTAACACTGGTTTTGTGACCCAGATGGGAGTGAGGTTTAGGAGGCTGAGCTTATTTATTACCATTTATTTTCAAAACAGTGAATTCTACTGACCCCATACTCCCATGCGCTCTGTTAAGGGCTGTCTTGTACTTGTATGGACAGAGTAGGAGTTTGGTTTGCATTGCCGGCAATACTTCAGACTGGTTTCCAGTGCTATTTGGACTCAGGCAGGGTTGTCACCATTTCTGCTCATAATTTTTATGGACAGAATTTCTATGCGCAGCCTTGGGCTGGAGGGGGTCAGGTTCAGGGACCACAGGATTATAGCTCTGTTATTCACAGACAAT
Additional Sequence
None
Fish
Supplemental Information
Genotyping protocol
None
Citations
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