Genomic Feature
pc39
- ID
- ZDB-ALT-210203-6
- Name
- pc39
- Synonyms
-
- -69bp (1)
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Peter Currie Lab
- Current Source
- Other Pages
Notes
| Comment | Citation |
|---|---|
| 69 bp deletion line. | Berger et al., 2020 |
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 1: 10914255 - 10914323 (GRCz11) (1) Details
- Nucleotide change
- ATAAGGTAGAATTTATTTGAAGCAATTACATGTGTTTATCTGCAGATCATGTGAATGTAATTACCTTGA/-
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 69 bp deleted in Exon 53 (1)
- Transcript Consequence
- Frameshift, Premature Stop (1)
- Protein Consequence
- Polypeptide Truncation (1)
- Flanking Sequence
-
AAATTACACAAAAACAACAAATTTTTAACTTTTTTAGTGAAATATATTTGTCCTAATGGTGTTTGTCGCAATGTGAGACATATAAATGACTGTCAACATCTTAAAAAATGGGTTTTGATGTTTCGTGACCCTTTAAACACACTATTGGTGGACTAATAATTGGTCTATAAGTCTCCTGAAAGCAATTGCACCTTAAAAAGCATTTTAAATAGCCTTTTCTGCACCATCACTGTGCCAGCAGTGCAATATATTTCAGACTCAACAATGCCACAAATACTTATGCAACCCCACTTGTTTCTGATGCTGGAAAATCACAGATTTATCCAGAAGCTCACCGCTTTTTGATGTTGGCCCAAGCCAGATTCATGCTCTCGGTCATTTGTTTCACTTTGCTTGTGTCGTCGTCTGCATAAAGAGTCAGTAGTTTGTTTGCCAGCTCATTAGTGACATTCATCTGAGTCTGCCACTGCTGTAGATCCTTAGAAAGTTGCTGCAATCCG
ATAAGGTAGAATTTATTTGAAGCAATTACATGTGTTTATCTGCAGATCATGTGAATGTAATTACCTTGA/- CATCTGCATTTTGGCCTTTTAAATCTTCAACGCTGTGCGAAACTTTCTTCCAGCTCTCGAGTTTTTCATTGGCTTTCTTAATGAGAGGCTCCACCCTTTTTCTGGCCTCCAACCAATCGCTGGAGTCCTTATACATGTTCTGCAGTGTAAGAACTCTGGCCGTCAGCTTGGCATGAGAATCTTCCCAATGTGCCTGTAACTTCTCAACTGTAAATAAAAGAAGATGGAACATTTCAAGGAAAGCGCTTTAGTTGATTTGATGGATAATTGCGGGGTGATAATTTTTATGGTAATGAGAAAATAGGGTTGATGATGGATGGAAATGATGGAATGATGAAACGGAGAGAATAATGGAAAGATGGAACAACATATAAACAATAAAGAAAACTGCTAAAGAATGGATAGATCGATGAGAGTCAAGCAAAACAAAGCATAATGGATTGATGGATGAATGACAAACAAAACGAATAAAGAGAATGACAATAATGATGTATGAATAA - Additional Sequence
- None
Fish
Supplemental Information
- Genotyping protocol
- None