Genomic Feature

as52

ID
ZDB-ALT-190423-4
Name
as52
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one delins (1)
Protocol
embryos treated with
Lab of Origin
Chen-Hui Chen Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Variants
Variant Type
Delins
Variant Location
Chr 8: 17181158 - 17182903 (GRCz11) (1) Details
Nucleotide change
TTAGACTGAGGATGTTCAGGAGTGGTCAGTGCTCGCTTCTGAGAGCCCTGTGTTCATGCAGAAATTAACTCATGTTATTTAACCGATCCAGTTTTTAATATAATGTAAATTACAGTATCGAATAAACAAGTCGGGTTGTATGACAGAAAGAAAGTTTAAAGCCTGATCTCTACACTACTTTCTCAACTTAGATCAACATATAATACGCAGAAAGGCTTTTCATTTTTAATCAGCCAGCTCAAGCGCTTCCGGTGAACTGTCATCCAAATACAAAAATCACTGCATTTAAATTCTGGTTTCTGTAAAAATTAATGATTTTCACTGCCTGATTCATATATTAAAAAGTGGGTCTCAGACTGGACAAGAAGCACTGCATTAAATTCCATTGTTCCATGCGGTGTCTTAAAATATGGAAATTTATGTTACCCCAGTATTTTAATTAAGTTTCTGCACTAGCCTGCTGCTCCTGGCGAACCAATCAATTTTACACTTGAACAACTAAATGAATGCTTACGTCTGTTTAACTGATTATAATTTAAATACATCACATCATCAATGCTGTAAAAGGAACCTTATGAAATTTAAAATAGCCACAGTAACCTTTAACCGGAGGTTAATCTGTGACTGAAAAACACTTGCAGACCATGCATTTTTATCTATCTTCATACATTTCCAACAAGTCTCCCTCATTATTCTGTCTTTATTTAGTCTCACCTTGGCAGGTGTTGAATAGGAATCCAGCATGTTCTCCTCTTCCTCCTCTGCTCTGATTCTGCAAGACTCAGTTAAGAAGATCACTTTGAACATTTATGAATAAAAATTAAACAATCATTAATCTTTATGTTGAGCTTTATGAGGATACAGCTCCTGGATGGAGTTGATGTCTCTGGTTTTGTTTATTTGGCTTCCCTTTGAGGTGCTTTTAGGCTTTTTCTTCTTGTTCAGTACCTGTAAGGAGTGCAGAAGCAGTATGCAAATTAGGGCTGCACAATCCTAGAAAAATTTGACATTGCAATATTTTATTTGTCTGTAATGTACATTGCGATACACTGATGCTATACAGTTCCACCAAATGACTAAATAGTTTTTTGGTCACACTATTTTAAGGTTCAATTCTCACTCTTAGCAAACCCTTATGACTTTTGCTTCAATAAACACCTAATTTGCTCCTTATTAATAGTTATTGTGGTTGTTTGTAAGAACTAATAAGAAGCCAATATATCAACAACAAGCATGCTAATAAGCAATTTGTTAATAGTGAGAATTGGTCCCTAAAGTGTTAACAAATGTATTATATCTGTTTGATTGGGATGATTTTAAAAGGGAGTAAATCGCATAAAATGTAGTACACTACAGGCATAGATAAATGCAACAAAGCAAAAAAAGGTGTAATAAACAGTGCAAGCTTTATGGTTTTGTATATGTAAATGTAAAAATAAATTACACCGCAAAGTCAACTCAACATTGCATATCTATGTAATGTGACTGAGGATTCACACATTGCAATATCAATGCTGAAAAGATATACAGGAATACTGTATTGTTTAGCTCTAAAGCAAATGAAGCATAGAAACATTGTGGATCTTATTTTTGGCATCTCAAAGCACTGCAGAATTTCAGTTGGAGTTTTTAATGTCATTTTACTAACTTCTTGTTCAAACTGGTCCAGGTTTTCGAGAGTGAGCGGCAGCTGCTTTCTGGTGGAGCTAAAAGCAAACCACTCGAATACAATTTCTTCACCCGTCA/CCGTTTGTT
Variant Notes
Part of the DNA polymerase alpha subunit B N-terminal domain is missing in the  ...
pola2-201, ENSDART00000025803.7, a deletion between exon 3 and exon 6, a 9 bp  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
9 bp inserted / 1746 bp deleted (1)
Transcript Consequence
None
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
AATTAACAGAAAAGCCACAATTATATATTCAGGCACTTTATCCAAAAGCAAAATCTAAGCATTTTTCAAACCTTACATAACAATTCAAGCATTTTCAAGGACCCAGCACCCGTACAAAACCTGTGTTTCTCAGAAATCTTAAAAATGTTTTCTCACCGTCCCGCACGTCCCTCAGTCTCTGAAACATGTATTTGTAGCTGCTGATGAGTGAATTCTCTCCTCCGTCCAGCATCTCCACGCTCACTGCAGTCTGTCCTTTCCCCATCCAGCGCGGACCCTGCACTGCCCCAAATGTGGAAACCACCTCTCCTCTCCCCCCACGCATGCCGTACTTTTGAGAAGGGGTTGCACTACACAAACACATCACCGATCTTTATAATATAGAACAAGTGCATCAAATTCTCTTAAAAGTAAAAATGTCAAATCAGTTTGTTTACCTTGGTGAGAAGCTGGCAGGTGACAGCATTAGACTGGGACTGGCGAGTCGGGCTACACCTCTC
TTAGACTGAGGATGTTCAGGAGTGGTCAGTGCTCGCTTCTGAGAGCCCTGTGTTCATGCAGAAATTAACTCATGTTATTTAACCGATCCAGTTTTTAATATAATGTAAATTACAGTATCGAATAAACAAGTCGGGTTGTATGACAGAAAGAAAGTTTAAAGCCTGATCTCTACACTACTTTCTCAACTTAGATCAACATATAATACGCAGAAAGGCTTTTCATTTTTAATCAGCCAGCTCAAGCGCTTCCGGTGAACTGTCATCCAAATACAAAAATCACTGCATTTAAATTCTGGTTTCTGTAAAAATTAATGATTTTCACTGCCTGATTCATATATTAAAAAGTGGGTCTCAGACTGGACAAGAAGCACTGCATTAAATTCCATTGTTCCATGCGGTGTCTTAAAATATGGAAATTTATGTTACCCCAGTATTTTAATTAAGTTTCTGCACTAGCCTGCTGCTCCTGGCGAACCAATCAATTTTACACTTGAACAACTAAATGAATGCTTACGTCTGTTTAACTGATTATAATTTAAATACATCACATCATCAATGCTGTAAAAGGAACCTTATGAAATTTAAAATAGCCACAGTAACCTTTAACCGGAGGTTAATCTGTGACTGAAAAACACTTGCAGACCATGCATTTTTATCTATCTTCATACATTTCCAACAAGTCTCCCTCATTATTCTGTCTTTATTTAGTCTCACCTTGGCAGGTGTTGAATAGGAATCCAGCATGTTCTCCTCTTCCTCCTCTGCTCTGATTCTGCAAGACTCAGTTAAGAAGATCACTTTGAACATTTATGAATAAAAATTAAACAATCATTAATCTTTATGTTGAGCTTTATGAGGATACAGCTCCTGGATGGAGTTGATGTCTCTGGTTTTGTTTATTTGGCTTCCCTTTGAGGTGCTTTTAGGCTTTTTCTTCTTGTTCAGTACCTGTAAGGAGTGCAGAAGCAGTATGCAAATTAGGGCTGCACAATCCTAGAAAAATTTGACATTGCAATATTTTATTTGTCTGTAATGTACATTGCGATACACTGATGCTATACAGTTCCACCAAATGACTAAATAGTTTTTTGGTCACACTATTTTAAGGTTCAATTCTCACTCTTAGCAAACCCTTATGACTTTTGCTTCAATAAACACCTAATTTGCTCCTTATTAATAGTTATTGTGGTTGTTTGTAAGAACTAATAAGAAGCCAATATATCAACAACAAGCATGCTAATAAGCAATTTGTTAATAGTGAGAATTGGTCCCTAAAGTGTTAACAAATGTATTATATCTGTTTGATTGGGATGATTTTAAAAGGGAGTAAATCGCATAAAATGTAGTACACTACAGGCATAGATAAATGCAACAAAGCAAAAAAAGGTGTAATAAACAGTGCAAGCTTTATGGTTTTGTATATGTAAATGTAAAAATAAATTACACCGCAAAGTCAACTCAACATTGCATATCTATGTAATGTGACTGAGGATTCACACATTGCAATATCAATGCTGAAAAGATATACAGGAATACTGTATTGTTTAGCTCTAAAGCAAATGAAGCATAGAAACATTGTGGATCTTATTTTTGGCATCTCAAAGCACTGCAGAATTTCAGTTGGAGTTTTTAATGTCATTTTACTAACTTCTTGTTCAAACTGGTCCAGGTTTTCGAGAGTGAGCGGCAGCTGCTTTCTGGTGGAGCTAAAAGCAAACCACTCGAATACAATTTCTTCACCCGTCA/CCGTTTGTT GCCTGTGACAAAAACACTGCTCCAACACTACAATAGAAAAAAAAACAAAAGTCATGTGTATTTAATTGAGGTAAAGTTTT  ...
Additional Sequence
None
Fish
Supplemental Information
Genotyping protocol
None
Citations
Your Input Welcome
We welcome your input and comments. Please use this form to recommend updates to the information in ZFIN. We appreciate as much detail as possible and references as appropriate. We will review your comments promptly.
Please check the highlighted fields and try again.
Thank you for submitting comments. Your input has been emailed to ZFIN curators who may contact you if additional information is required.
Oops. Something went wrong. Please try again later.