Genomic Feature

uq19ks

ID
ZDB-ALT-190103-1
Name
uq19ks
Synonyms
  • uqks19 (1)
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Kelly Smith Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Variants
Variant Type
Small Deletion
Variant Location
Chr 8: 48613125 - 48613128 (GRCz11) (1) Details
Nucleotide change
GATG/-
Variant Notes
mutation sequence details
nppa, Chr  ...
TALEN1-nppa was used to target exon 1 of nppa, producing a 4 bp deletion  ...
Functional null - predicted mutant protein lacks the C-terminal region, which  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
4 bp deleted in Exon 1 (1)
Transcript Consequence
Frameshift (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
TTATGTGCGGTCATCATGCCAACAACACAAGAAATCAGTCAGATAAAACCTCTCCAATAAACATATTTTACATATAGTCCACAAAGTCATCCCTTCAGTCTGCATCATTGGCCTATATATAGGATTGCGGTCTGCTTTAACCCCTTATGGTATACTCAGTTGTAGTTTGTATCTGATGCCGGAAGCATGTGAGCCACTCGTGTGCAGCGGATTCATTCCCCATGATGCCTGAGGTCACTGTTTGTGTCCGAGTTACCAGGACTTCTCCAGGCCTGCGAAAAACAGCCACTTAAAAGGAAATCTGCCCCAGCAAGCGTTATCACAGACGAGGTGTCGGAATGCACTTCACACGCTTTACCACGGATGAGCCACTGACAGCCAACTGTCCCTATATAAGAGCCAAGCCAGTTCAGAGGGCAAGAAAACGCATTCAGAGACACTCAGAGATGGCCGGGGGACTAATTCTGACAGGACTGCTGCTCCTGGTTTGGCAGCAGACG
GATG/- TACAAGCGCACACGTTGAGCAGACACAGCTCTGACAGCAACATGGCCAAGCTCAAGGTATTTGGGTTTATGTTTAACCAATTCAATGTGAGGTAAACAGTCAGTGCTCTTAAAAGTTAGTGGTTTTTCGTCACTGAAACAACTTCTTTTACAACGTTTTGTACAGTTGAAGTTTTCTGTTGATGTTGAAGGTTCTTTATGTGACTTTCAATATCGAAAAAATAAGAAGTAAAATTATTAGATACTCTTAAAAGGTCATTGGCAGCATGTTTACATAAAGAATCTTTAACATTCATGGAAACTTTCCAATTCTCCAAAAGTATTGTGATTCACCTATTAACAACTTCCGTTGGACAAATGGTTCTTATTGTGCGAGGGATTTTTATATGCACAGTCATTTTTCAAATCTTTATGACACACAAGGCTTTTAGTTAAAAATGATTGCAAATTACTTATGCACATTTTCTATTAGACAAAAGGTTCTTATAGTATACAAAAAAG
Additional Sequence
None
Fish
Supplemental Information
Genotyping protocol
None
Citations