Genomic Feature
mi600
- ID
- ZDB-ALT-160602-15
- Name
- mi600
- Synonyms
-
- Hif-3α1Δ42 (1)
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Cunming Duan Lab
- Current Source
- Other Pages
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 15: 25508702 - 25508743 (GRCz11) (1) Details
- Nucleotide change
- GGCTTGAGGGCGAAGAACTTCTCCACTCCTTCCATCTCCATG/-
- Variant Notes
-
The deletion targets the N-terminal end of the transactivation domain.
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 42 bp deleted in Exon 11 (1)
- Transcript Consequence
- None
- Protein Consequence
- Amino Acid Deletion: from position 456 to 469 (1)
- Flanking Sequence
-
AAGAGGTATTTAAAATCATATTAATATCACTTTTTAGTAGTGTTTTAATTAAATAAACATAGCCTTGGTATACAATAGATGTGTTTAAATTTTCTGGATAATATCTCTCTCACTCACTCACTCACTCAGTCAGTCACTCACTCACACTCACTCACTCACTCGGTCACTCAGTCACTCACTTAGTCACTCACTCGGTCACTCACTCGGTCACTCACTCGCACAAATCTGTTGAATTCATAATCATACTTTACCGTTTCCTAGAATTACTGGTTAGCATTTCCAAAGGTGGTGTTATTTCACTCTGGGGCAGGAAGGTCAACTGGAAGTCATCGTCCATTGAGATATATGGAGCTAGCATGTCCAAATCAAGCTCATCCACAGCCTATCAGAGAATCAATGCATGAAACACCCACGATTCTCCTCTTAAGCATATCATAAAGCATCTCAACATTACTTTGAGATCTACCTCTGACTGTCCTTTCGGGGTTAGGCTCTCCTCA
GGCTTGAGGGCGAAGAACTTCTCCACTCCTTCCATCTCCATG/- GGCAGCTCTTCAGCGGGGCTCTGCTGAAACAAACCCTTAAACGTCAAATGGTTCAAATTCAACAAATAATAAATACACAAACAAACCCTTTCACACACCGCTGCAGGGTGAGATTTGGCCGGTCCATCGAATATTGGAGACAGAAGCTTGCGGAGTTCAGGCGTGCAGAAGTCCTGAGGGCATTCCGGGACACTGTTGGGACTTTGCGGACAGCAGAAGGACAACTCCAAACCCTCTGTGAAAATAATCAAGCATTATTAAAGGTTTTTTTTTGTTTGATGTGTAACTTAGCTTCATCTTAAACATAGATAGAGTAGGGATCGAATAGGTCCTCCCCCTTATTAAAATAGCCAATAGGGTTTAATTCCCATCACAGCTCCGCAAGCCATTAAACTAAAGCACATCAGAGTAATGATTATAGCAACAGTCTATAATAGTAATGCTCAGACTGTTTCTCTCCTTTGTCCAGAAATGAAAGCTTTTCGAATATAGTGAAATAG - Additional Sequence
- None
Fish
Supplemental Information
- Genotyping protocol
- None