Genomic Feature

pd1104

ID
ZDB-ALT-160405-5
Name
pd1104
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one delins (1)
Protocol
embryos treated with
Lab of Origin
Bagnat Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Variants
Variant Type
Delins
Variant Location
Chr 25: 18564434 - 18564468 (GRCz11) (1) Details
Nucleotide change
CACTTCAGGATGTCCACACCAAGGAG/TGTCCACACCAA
Variant Notes
This is a cav1 mutant with a 23 nt deletion and disrupts both isoforms a and b.  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
12 bp inserted / 23 bp deleted (1)
Transcript Consequence
None
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
ACACTTTCACAAACACAGCTGAATAAAATAATACTAGGCTATGAAAATATGAACTGCTCATTAATCCAGGTGAAATAGAAGTACTTTATCAATACACATATTTATAAAGGGAAACTGCGTCTAAACAATTTTGTTACAGTAATATAATTTAAGCACGAACTAAAAACAAGATTTTTCAGCAGTGAGCGCATTTTCATATTTTCTGCTGCGGAATAAAAAGGGAGCACAACAGGCGCATAATGTAAAATGGCGCCTCCGTGTGGCGGGATGCGCCACTGTGTTCCAGAGGGGTGTGGTGCTTCATTTCTATCCGCTTAAAACCATCCCATGCCAGGGCTGTGCTGAGTTGCGCCCGAGTCTCCCACTCCACGCTCATGAACTTCATTTTCTGTTTTCTTTGGAACCGCAGGAATACGCTCACTCGCCGTTTATCAGGAAACAGGGGAACATTTACAAACCAAACAATAAAGAAATGGATAACGACAGCATCAACGAAAAGA
CACTTCAGGATGTCCACACCAAGGAG/TGTCCACACCAA GTCAACCGAGACCCAAAGCATTTAAATGACGATGTGGTGAAGGTAGGACAAACTTTGTCTGGTTCATGCAACTTTTTTAATTGTTGGGTATTCAATTTAAATTTAAAATATAAATAATGAGGACATTTGTTTAACTGCATGGAAACGTTAATAAGAATCTCACAGGTTATTGTTTAGTATATGTGATATTCATAACTGCATACTTGATATTAGCAAATATAATTTGTATGGACAGATAAAAGCAAATCCTTCATTGTTATATTTAATTTATAATTCAGAAAAGTCTTTAAAGTGCATTGCAGTTTATACACACTGCTAAGTAAGACCATTTTATCCCAATAGTTTCCCATTATAACACAATAGAAAGTTGGCTTCATAACAAAAGTGGTGAGTCAGTGGTCAGTTTGTCAAGGTGGCACTGGAAACGATTAATTTTGAATGTAGAAACAATGATGGCTTCAAGTACTTGGGAATTATAATGTACAATTTTACTTGCAAAA
Additional Sequence
None
Fish
Supplemental Information
Genotyping protocol
None
Citations