Transcript

cdpf1-205

ID

ZDB-TSCRIPT-160112-332

Name

cdpf1-205 Nomenclature History

Previous Names

si:ch211-239e6.4-005

Transcript Type

aberrant processed transcript

Annotation Status

nonsense mediated decay

Annotation Method

Ensembl

Associated With Genes

cdpf1 (1)

Strain

Non Reference Strain

Genome Resources

RNA Central

None

Note

None

Sequence

ENSDART00000141386 (1) [ Show ] (double-click sequence to select)

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>tpe|ENSDART00000141386.5|gene_biotype:protein_coding|ENSDARG00000095705.5 transcript_biotype:nonsense_mediated_decay gene_symbol:cdpf1 cdna chromosome:GRCz11:4:18597660:18606538:-1
GACACACCGTAGCAGCAGCATGGCGTGAGCGGTCGTGCGC
GTGCTGGCTGCAGACAAACTTGCATCGTCTTGCAGACGGG
AATGGATTTGACGGAAGGCTCCGCGCTCGGCGTGTTCAGC
TGCCAGCTGTGCGAGGTTTCCAGCCCATACAGCTTTTACG
GACAGAAGCCGCCGAACACCAGAGCTATAGTCTTTGTTCC
ACTGAATGAAGTCTGTAGATGGGGATCAACTTTGAATGTC
TTCCTGACATGGCATCCTCCTGAAGGCTGTCATTTGGGCC
GAATATGCTCTTGGAGGAATGTTTTGGCATAAAGGACCCC
TTCAGCCCAGAGAGAGAGAAGTTTCTGATTTTAGGATCCA
AGTGCTCTCTGTGCAGCAAGACTGTGTGTGTGGGAACGGA
CTGCAGTTTGTTCTACACCAAGCGCTTCTGCTTGCCTTGT
GTGCGGGAGCACCTCGATCAGTTTCCAGAGCAGGTTCAGA
ACGAGCTGCTGAGGAAGAAGAGCGTCCAGAAGAGCACGTC
CTCATGATAATTGATTTCATGTGATTATATTCATTTATGA
TCAGATCAATGAAATGAAAGTGTGAGTGATGATAAAGTTT
GATTTTGTGGTTGTGCTCGTATGAAGCAAGTTTGAGCAGC
AGAGCATCTGTTGAATGTGACCGTTTATGGTGTTTACACA
ATATTTTGTAAGTGACAAGAGTGTTAAATAAATAGTGTGA
AGAA

OTTDART00000062299 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|OTTDART00000062299|OTTDARG00000008128| CH211-239E6.4|OTTDARP00000048689 CH211-239E6.4-005 LG_ BX649425.3 Danio rerio protein_coding NOVEL, 724 bp
GACACACCGTAGCAGCAGCATGGCGTGAGCGGTCGTGCGC
GTGCTGGCTGCAGACAAACTTGCATCGTCTTGCAGACGGG
AATGGATTTGACGGAAGGCTCCGCGCTCGGCGTGTTCAGC
TGCCAGCTGTGCGAGGTTTCCAGCCCATACAGCTTTTACG
GACAGAAGCCGCCGAACACCAGAGCTATAGTCTTTGTTCC
ACTGAATGAAGTCTGTAGATGGGGATCAACTTTGAATGTC
TTCCTGACATGGCATCCTCCTGAAGGCTGTCATTTGGGCC
GAATATGCTCTTGGAGGAATGTTTTGGCATAAAGGACCCC
TTCAGCCCAGAGAGAGAGAAGTTTCTGATTTTAGGATCCA
AGTGCTCTCTGTGCAGCAAGACTGTGTGTGTGGGAACGGA
CTGCAGTTTGTTCTACACCAAGCGCTTCTGCTTGCCTTGT
GTGCGGGAGCACCTCGATCAGTTTCCAGAGCAGGTTCAGA
ACGAGCTGCTGAGGAAGAAGAGCGTCCAGAAGAGCACGTC
CTCATGATAATTGATTTCATGTGATTATATTCATTTATGA
TCAGATCAATGAAATGAAAGTGTGAGTGATGATAAAGTTT
GATTTTGTGGTTGTGCTCGTATGAAGCAAGTTTGAGCAGC
AGAGCATCTGTTGAATGTGACCGTTTATGGTGTTTACACA
ATATTTTGTAAGTGACAAGAGTGTTAAATAAATAGTGTGA
AGAA

Related Transcripts

Transcripts related to cdpf1

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	cdpf1-205	Ensembl	724 nt
mRNA	cdpf1-201 (1) Ensembl	Ensembl	882 nt	Select Tool ZFIN BLAST
mRNA	cdpf1-202 (1) Ensembl	Ensembl	775 nt	Select Tool ZFIN BLAST
mRNA	cdpf1-204 (1) Ensembl	Ensembl	842 nt	Select Tool ZFIN BLAST
mRNA	cdpf1-206 (1) Ensembl	Ensembl	451 nt	Select Tool ZFIN BLAST
mRNA	cdpf1-207 (1) Ensembl	Ensembl	659 nt	Select Tool ZFIN BLAST
ncRNA	si:ch211-239e6.4-002 (1) Ensembl	Ensembl	558 nt	Select Tool ZFIN BLAST

Segment Relationships

Protein Products

No data available

Supporting Sequences

Citations