Transcript

ldb3a-211

ID

ZDB-TSCRIPT-090929-17908

Name

ldb3a-211 Nomenclature History

Previous Names

ldb3a-005

Transcript Type

aberrant processed transcript

Annotation Status

nonsense mediated decay

Annotation Method

Ensembl

Associated With Genes

ldb3a (1)

Strain

Non Reference Strain

Genome Resources

RNA Central

None

Note

None

Sequence

ENSDART00000131856 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|ENSDART00000131856.3|gene_biotype:protein_coding|ENSDARG00000056322.9 transcript_biotype:nonsense_mediated_decay gene_symbol:ldb3a cdna chromosome:GRCz11:13:22480857:22549811:1
ATGACTTCGTACAACGTGTCACTCTCTGGACCTCCACCTT
GGGGCTTCCGGTTGCAAGGAGGCAAGGACTTCAATATGCC
CCTCACCGTTTCTAGGATTACACCGGGGAGCAAGGCGGCC
TCCAGCAATCTGATCCAGGGGGATATCATCGTGGCCATTG
ATGGGGTCAGCACAGACGGGATGACACACCTGGAGGCCCA
AAACAAGATCAAGTCTGCCAACTTCAATCTGGCTCTCACC
ATGCAAAGGTCAAAGCGACCCACCCCAGTTCCAATTGCCA
CACCAAGAATTGAATCTCCGATGCCTGTGATTCCTCATCA
GAAGCTACAGCTTGCAGACCTCTATGGGCTACACTTCCCA
GTACAAAACCTCCATCTCAAGTTCTTACAGCCAGCCTCCG
CCTATGCAGCAGCCTCCGCTCATGCAGCAGCCTCCACTCA
TGCAGCAGCCTCCACTCATGCAGCAGCCTCCACCAATGCA
CCAGCATCCACCCATGCACCAACCTCCACCCATGCAGCAA
CCTCCACTTATGCAGCAGCCTCCACCCATGCAGCACAGCT
CCATCCAGATCCCTGTAGGTCCACCACCACCCAAAGTGGT
CAGCACAGCCACCATTATGCCTGCTTCCTACCCAGCTGGT
CCAGCACCAGCTCCTCCAATGGTGCACAAGCCTGCCCCAC
CTCCACCTGCTCCTCCAGCAGCTCCAGCATCGTCTTCCAA
CAGGCCTCCCTGGGTTACTGATGATAACTTTGCTCAGAAA
TTTGACCCCAGCAAACCCACCCCCAACACGAATATCAAAG
TGCAGCCTCTTCCCCAGGCGGCTCCACCACCACCATCTAT
TATCTCTAACCCGGTTCCTGCAGCACCAAGTCCTGCATTT
AACCCCGCCCCTCCTCCCTTCAACCCTGCCCCCTTCCCAC
CGGTGGCTCGTGGAGTTGCTCAAAGGGCGGAGCGGTTTGC
AGCTAGCAACAGGACACCTCTGTGTGCTACCTGCAACAAT
ATCATCAGGGGACCATTCCTGGTGGCATTGGGTCGTTCCT
GGCATCCAGAGGAGTTCAACTGCCATTACTGCCACACATC
TCTGGCTGATGTCAGTTTTGTGGAGGAGCAGAATAATGTT
TACTGTGAGAACTGCTATGAAGAGTTCTTCGCACCTACCT
GTGCCCGCTGCAGCACCAAGATCATGGGAGAAGTGATGCA
TGCACTGCGGCAGACCTGGCACACCACATGCTTTGTGTGT
GCGGCCTGTGGAAAGCCTTTTGGAAACAGCCTCTTCCATA
TGGAGGATGGTGAGCCGTACTGTGAGAAAGATTATATTGC
ACTCTTTAGTACAAAGTGCCATGGCTGTGACTTCCCTGTT
GAAGCAGGAGACAAATTTATCGAAGCTCTTGGCCACACAT
GGCACGATACCTGCTTTGTTTGTGCGGTCTGCCACGTCAA
CCTGGAAGGACAACCGTTCTACTCCAAGAAGGACAAGCCT
TTATGCAAGAAGCATGCACATGCCATCAATGTGTAG

OTTDART00000037499 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|OTTDART00000037499|OTTDARG00000027759|ZDB-GENE-040121-6 ldb3a|OTTDARP00000030053 ldb3-005 LG_ CT573135.6 Danio rerio protein_coding KNOWN, 1516 bp
ATGACTTCGTACAACGTGTCACTCTCTGGACCTCCACCTT
GGGGCTTCCGGTTGCAAGGAGGCAAGGACTTCAATATGCC
CCTCACCGTTTCTAGGATTACACCGGGGAGCAAGGCGGCC
TCCAGCAATCTGATCCAGGGGGATATCATCGTGGCCATTG
ATGGGGTCAGCACAGACGGGATGACACACCTGGAGGCCCA
AAACAAGATCAAGTCTGCCAACTTCAATCTGGCTCTCACC
ATGCAAAGGTCAAAGCGACCCACCCCAGTTCCAATTGCCA
CACCAAGAATTGAATCTCCGATGCCTGTGATTCCTCATCA
GAAGCTACAGCTTGCAGACCTCTATGGGCTACACTTCCCA
GTACAAAACCTCCATCTCAAGTTCTTACAGCCAGCCTCCG
CCTATGCAGCAGCCTCCGCTCATGCAGCAGCCTCCACTCA
TGCAGCAGCCTCCACTCATGCAGCAGCCTCCACCAATGCA
CCAGCATCCACCCATGCACCAACCTCCACCCATGCAGCAA
CCTCCACTTATGCAGCAGCCTCCACCCATGCAGCACAGCT
CCATCCAGATCCCTGTAGGTCCACCACCACCCAAAGTGGT
CAGCACAGCCACCATTATGCCTGCTTCCTACCCAGCTGGT
CCAGCACCAGCTCCTCCAATGGTGCACAAGCCTGCCCCAC
CTCCACCTGCTCCTCCAGCAGCTCCAGCATCGTCTTCCAA
CAGGCCTCCCTGGGTTACTGATGATAACTTTGCTCAGAAA
TTTGACCCCAGCAAACCCACCCCCAACACGAATATCAAAG
TGCAGCCTCTTCCCCAGGCGGCTCCACCACCACCATCTAT
TATCTCTAACCCGGTTCCTGCAGCACCAAGTCCTGCATTT
AACCCCGCCCCTCCTCCCTTCAACCCTGCCCCCTTCCCAC
CGGTGGCTCGTGGAGTTGCTCAAAGGGCGGAGCGGTTTGC
AGCTAGCAACAGGACACCTCTGTGTGCTACCTGCAACAAT
ATCATCAGGGGACCATTCCTGGTGGCATTGGGTCGTTCCT
GGCATCCAGAGGAGTTCAACTGCCATTACTGCCACACATC
TCTGGCTGATGTCAGTTTTGTGGAGGAGCAGAATAATGTT
TACTGTGAGAACTGCTATGAAGAGTTCTTCGCACCTACCT
GTGCCCGCTGCAGCACCAAGATCATGGGAGAAGTGATGCA
TGCACTGCGGCAGACCTGGCACACCACATGCTTTGTGTGT
GCGGCCTGTGGAAAGCCTTTTGGAAACAGCCTCTTCCATA
TGGAGGATGGTGAGCCGTACTGTGAGAAAGATTATATTGC
ACTCTTTAGTACAAAGTGCCATGGCTGTGACTTCCCTGTT
GAAGCAGGAGACAAATTTATCGAAGCTCTTGGCCACACAT
GGCACGATACCTGCTTTGTTTGTGCGGTCTGCCACGTCAA
CCTGGAAGGACAACCGTTCTACTCCAAGAAGGACAAGCCT
TTATGCAAGAAGCATGCACATGCCATCAATGTGTAG

Related Transcripts

Transcripts related to ldb3a

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	ldb3a-211	Ensembl	1,516 nt
mRNA	ldb3a-201 (1) Ensembl	Ensembl	852 nt	Select Tool
mRNA	ldb3a-202 (1) Ensembl	Ensembl	780 nt	Select Tool
mRNA	ldb3a-203 (1) Ensembl	Ensembl	900 nt	Select Tool
mRNA	ldb3a-204 (1) Ensembl	Ensembl	1,322 nt	Select Tool
mRNA	ldb3a-205 (1) Ensembl	Ensembl	4,619 nt	Select Tool
mRNA	ldb3a-206 (1) Ensembl	Ensembl	1,791 nt	Select Tool
mRNA	ldb3a-207 (1) Ensembl	Ensembl	2,191 nt	Select Tool ZFIN BLAST
mRNA	ldb3a-208 (1) Ensembl	Ensembl	777 nt	Select Tool
mRNA	ldb3a-209 (1) Ensembl	Ensembl	1,767 nt	Select Tool
mRNA	ldb3a-210 (1) Ensembl	Ensembl	791 nt	Select Tool
mRNA	ldb3a-212 (1) Ensembl	Ensembl	2,119 nt	Select Tool
mRNA	ldb3a-213 (1) Ensembl	Ensembl	856 nt	Select Tool
mRNA	ldb3a-214 (1) Ensembl	Ensembl	925 nt	Select Tool
mRNA	ldb3a-215 (1) Ensembl	Ensembl	911 nt	Select Tool
mRNA	ldb3a-216 (1) Ensembl	Ensembl	867 nt	Select Tool
mRNA	ldb3a-217 (1) Ensembl	Ensembl	880 nt	Select Tool
mRNA	ldb3a-218 (1) Ensembl	Ensembl	2,507 nt	Select Tool ZFIN BLAST
mRNA	ldb3a-219 (1) Ensembl	Ensembl	1,592 nt	Select Tool ZFIN BLAST
mRNA	ldb3a-220 (1) Ensembl	Ensembl	1,745 nt	Select Tool ZFIN BLAST

Segment Relationships

Protein Products

No data available

Supporting Sequences

Citations