Transcript

sim1b-202

ID

ZDB-TSCRIPT-090929-16439

Name

sim1b-202 Nomenclature History

Previous Names

sim1b-002
si:ch211-152c2.1-002

Transcript Type

aberrant processed transcript

Annotation Status

nonsense mediated decay

Annotation Method

Ensembl

Associated With Genes

sim1b (1)

Strain

Non Reference Strain

Genome Resources

RNA Central

None

Note

None

Sequence

ENSDART00000141639 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|ENSDART00000141639.2|gene_biotype:protein_coding|ENSDARG00000013789.12 transcript_biotype:nonsense_mediated_decay gene_symbol:sim1b cdna chromosome:GRCz11:4:937229:948842:-1
CTGTGCGCGTGCCTCCCGGCGGATTTACCGGCACTCTGAC
GGGATTTTAACGCGATTAACGGCACGATGAAGGAGAAATC
AAAGACTGCGGCGAGGACGCGGCGGGAGAAGGAGAACAGC
GAGTTTTACGAGCTCGCCAAAATGTTGCCTTTGCCGTCCG
CCATCACGTCTCAACTGGACAAAGCGTCCATCATCAGACT
GACCAGCAGCTACCTGAAGATGAGACTGGTGTTCCCGCAA
GGTGTGGGGTCAAGCGGGGCGAACCAGATCTGGAGAAAAC
CCATCCCATGAGCTCGGATCTCATTTACTCCAGGTAATAA
TCAGCAAGATGCTCCAGACTTTAGACGGGTTTATATTTGT
AGTGGCTGCGGATGGGAAGATCATGTACATCTCTGAGACG
GCGTCGGTTCATCTGGGCCTTTCACAGGTAGAATTGACCG
GAAACAGTATTTATGAATACGTTCATCCGGCGGATCATGA
CGAGATGGCGGCGGTGCTGACTCCACAACCTTCATATCAT
TCACACTTCGTCCAGGAGTACGAGGTGGAGCGATCGTTTT
TCCTGAGGATGAAGTGTGTTTTGGCGAAGCGAAACGCCGG
ACTGACGAGTGGAGGATATAAGGTGATCCACTGCAGCGGG
TACCTGAAGATCCGCCAGTTCAGTCTGGATGCGTCTCCGT
TCGATGGCTGCTATCAGAACGTGGGTCTGGTGGCCGTCGG
ACACACACTCCCACCGAGCGCCGTCACAGAGATCAAACTA
CACAGCAACATGTTCATGTTTCGAGCCAGTCTGGACATGA
AGCTCATCTTCCTGGA

OTTDART00000035882 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|OTTDART00000035882|OTTDARG00000007181|ZDB-GENE-041210-5 sim1b|OTTDARP00000028783 sim1b-002 LG_ BX649468.12 Danio rerio protein_coding KNOWN, 816 bp
CTGTGCGCGTGCCTCCCGGCGGATTTACCGGCACTCTGAC
GGGATTTTAACGCGATTAACGGCACGATGAAGGAGAAATC
AAAGACTGCGGCGAGGACGCGGCGGGAGAAGGAGAACAGC
GAGTTTTACGAGCTCGCCAAAATGTTGCCTTTGCCGTCCG
CCATCACGTCTCAACTGGACAAAGCGTCCATCATCAGACT
GACCAGCAGCTACCTGAAGATGAGACTGGTGTTCCCGCAA
GGTGTGGGGTCAAGCGGGGCGAACCAGATCTGGAGAAAAC
CCATCCCATGAGCTCGGATCTCATTTACTCCAGGTAATAA
TCAGCAAGATGCTCCAGACTTTAGACGGGTTTATATTTGT
AGTGGCTGCGGATGGGAAGATCATGTACATCTCTGAGACG
GCGTCGGTTCATCTGGGCCTTTCACAGGTAGAATTGACCG
GAAACAGTATTTATGAATACGTTCATCCGGCGGATCATGA
CGAGATGGCGGCGGTGCTGACTCCACAACCTTCATATCAT
TCACACTTCGTCCAGGAGTACGAGGTGGAGCGATCGTTTT
TCCTGAGGATGAAGTGTGTTTTGGCGAAGCGAAACGCCGG
ACTGACGAGTGGAGGATATAAGGTGATCCACTGCAGCGGG
TACCTGAAGATCCGCCAGTTCAGTCTGGATGCGTCTCCGT
TCGATGGCTGCTATCAGAACGTGGGTCTGGTGGCCGTCGG
ACACACACTCCCACCGAGCGCCGTCACAGAGATCAAACTA
CACAGCAACATGTTCATGTTTCGAGCCAGTCTGGACATGA
AGCTCATCTTCCTGGA

Related Transcripts

Transcripts related to sim1b

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
aberrant processed transcript	sim1b-202	Ensembl		816 nt
mRNA	sim1b-201 (1) Ensembl	Ensembl		1,761 nt	Select Tool ZFIN BLAST

Segment Relationships

Protein Products

No data available

Supporting Sequences

Citations