stop_lost

Term ID

SO:0001578

Synonyms

• ANNOVAR:stoploss
• Jannovar:stop_lost
• Seattleseq:stop-lost
• Seattleseq:stop-lost-near-splice
• snpEff:STOP_LOST
• stop codon lost
• stop lost
• VAAST:stop_lost
• VAT:removedStop
• VEP:stop_lost

Definition

A sequence variant where at least one base of the terminator codon (stop) is changed, resulting in an elongated transcript.

References

• http://snp.gs.washington.edu/SeattleSeqAnnotation137/HelpHowToUse.jsp
• http://snpeff.sourceforge.net/SnpEff_manual.html
• http://vat.gersteinlab.org/formats.php
• http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences

Ontology

Sequence Ontology