Biography and Research Interest

We are interested in the analysis, comparison, and evolution of gene regulatory networks in bilaterian animals.

Publications

Non-Zebrafish Publications

Tribolium Genome Sequencing Consortium, Richards, S., Gibbs, R.A., Weinstock, G.M., Brown, S.J., Denell, R., Beeman, R.W., Gibbs, R., Beeman, R.W., Brown, S.J., Bucher, G., Friedrich, M., Grimmelikhuijzen, C.J., Klingler, M., Lorenzen, M., Richards, S., Roth, S., Schröder, R., Tautz, D., Zdobnov, E.M., Muzny, D., Gibbs, R.A., Weinstock, G.M., Attaway, T., Bell, S., Buhay, C.J., Chandrabose, M.N., Chavez, D., Clerk-Blankenburg, K.P., Cree, A., Dao, M., Davis, C., Chacko, J., Dinh, H., Dugan-Rocha, S., Fowler, G., Garner, T.T., Garnes, J., Gnirke, A., Hawes, A., Hernandez, J., Hines, S., Holder, M., Hume, J., Jhangiani, S.N., Joshi, V., Khan, Z.M., Jackson, L., Kovar, C., Kowis, A., Lee, S., Lewis, L.R., Margolis, J., Morgan, M., Nazareth, L.V., Nguyen, N., Okwuonu, G., Parker, D., Richards, S., Ruiz, S.J., Santibanez, J., Savard, J., Scherer, S.E., Schneider, B., Sodergren, E., Tautz, D., Vattahil, S., Villasana, D., White, C.S., Wright, R., Park, Y., Beeman, R.W., Lord, J., Oppert, B., Lorenzen, M., Brown, S., Wang, L., Savard, J., Tautz, D., Richards, S., Weinstock, G., Gibbs, R.A., Liu, Y., Worley, K., Weinstock, G., Elsik, C.G., Reese, J.T., Elhaik, E., Landan, G., Graur, D., Arensburger, P., Atkinson, P., Beeman, R.W., Beidler, J., Brown, S.J., Demuth, J.P., Drury, D.W., Du, Y.Z., Fujiwara, H., Lorenzen, M., Maselli, V., Osanai, M., Park, Y., Robertson, H.M., Tu, Z., Wang, J.J., Wang, S., Richards, S., Song, H., Zhang, L., Sodergren, E., Werner, D., Stanke, M., Morgenstern, B., Solovyev, V., Kosarev, P., Brown, G., Chen, H.C., Ermolaeva, O., Hlavina, W., Kapustin, Y., Kiryutin, B., Kitts, P., Maglott, D., Pruitt, K., Sapojnikov, V., Souvorov, A., Mackey, A.J., Waterhouse, R.M., Wyder, S., Zdobnov, E.M., Zdobnov, E.M., Wyder, S., Kriventseva, E.V., Kadowaki, T., Bork, P., Aranda, M., Bao, R., Beermann, A., Berns, N., Bolognesi, R., Bonneton, F., Bopp, D., Brown, S.J., Bucher, G., Butts, T., Chaumot, A., Denell, R.E., Ferrier, D.E., Friedrich, M., Gordon, C.M., Jindra, M., Klingler, M., Lan, Q., Lattorff, H.M., Laudet, V., von Levetsow, C., Liu, Z., Lutz, R., Lynch, J.A., da Fonseca, R.N., Posnien, N., Reuter, R., Roth, S., Savard, J., Schinko, J.B., Schmitt, C., Schoppmeier, M., Schröder, R., Shippy, T.D., Simonnet, F., Marques-Souza, H., Tautz, D., Tomoyasu, Y., Trauner, J., Van der Zee, M., Vervoort, M., Wittkopp, N., Wimmer, E.A., Yang, X., Jones, A.K., Sattelle, D.B., Ebert, P.R., Nelson, D., Scott, J.G., Beeman, R.W., Muthukrishnan, S., Kramer, K.J., Arakane, Y., Beeman, R.W., Zhu, Q., Hogenkamp, D., Dixit, R., Oppert, B., Jiang, H., Zou, Z., Marshall, J., Elpidina, E., Vinokurov, K., Oppert, C., Zou, Z., Evans, J., Lu, Z., Zhao, P., Sumathipala, N., Altincicek, B., Vilcinskas, A., Williams, M., Hultmark, D., Hetru, C., Jiang, H., Grimmelikhuijzen, C.J., Hauser, F., Cazzamali, G., Williamson, M., Park, Y., Li, B., Tanaka, Y., Predel, R., Neupert, S., Schachtner, J., Verleyen, P., Raible, F., Bork, P., Friedrich, M., Walden, K.K., Robertson, H.M., Angeli, S., Forêt, S., Bucher, G., Schuetz, S., Maleszka, R., Wimmer, E.A., Beeman, R.W., Lorenzen, M., Tomoyasu, Y., Miller, S.C., Grossmann, D., and Bucher, G. (2008) The genome of the model beetle and pest Tribolium castaneum. Nature. 452(7190):949-955. PMID: 18362917

Rebscher, N., Zelada-González, F., Banisch, T.U., Raible, F., and Arendt, D. (2007) Vasa unveils a common origin of germ cells and of somatic stem cells from the posterior growth zone in the polychaete Platynereis dumerilii. Dev Biol. 306(2):599-611. PMID: 17467683

Denes, A.S., Jékely, G., Steinmetz, P.R., Raible, F., Snyman, H., Prud'homme, B., Ferrier, D.E., Balavoine, G., and Arendt, D. (2007) Molecular architecture of annelid nerve cord supports common origin of nervous system centralization in bilateria. Cell. 129(2):277-288. PMID: 17448990

Sea Urchin Genome Sequencing Consortium, Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, Foltz KR, Hamdoun A, Hynes RO, Klein WH, Marzluff W, McClay DR, Morris RL, Mushegian A, Rast JP, Smith LC, Thorndyke MC, Vacquier VD, Wessel GM, Wray G, Zhang L, Elsik CG, Ermolaeva O, Hlavina W, Hofmann G, Kitts P, Landrum MJ, Mackey AJ, Maglott D, Panopoulou G, Poustka AJ, Pruitt K, Sapojnikov V, Song X, Souvorov A, Solovyev V, Wei Z, Whittaker CA, Worley K, Durbin KJ, Shen Y, Fedrigo O, Garfield D, Haygood R, Primus A, Satija R, Severson T, Gonzalez-Garay ML, Jackson AR, Milosavljevic A, Tong M, Killian CE, Livingston BT, Wilt FH, Adams N, Bellé R, Carbonneau S, Cheung R, Cormier P, Cosson B, Croce J, Fernandez-Guerra A, Genevière AM, Goel M, Kelkar H, Morales J, Mulner-Lorillon O, Robertson AJ, Goldstone JV, Cole B, Epel D, Gold B, Hahn ME, Howard-Ashby M, Scally M, Stegeman JJ, Allgood EL, Cool J, Judkins KM, McCafferty SS, Musante AM, Obar RA, Rawson AP, Rossetti BJ, Gibbons IR, Hoffman MP, Leone A, Istrail S, Materna SC, Samanta MP, Stolc V, Tongprasit W, Tu Q, Bergeron KF, Brandhorst BP, Whittle J, Berney K, Bottjer DJ, Calestani C, Peterson K, Chow E, Yuan QA, Elhaik E, Graur D, Reese JT, Bosdet I, Heesun S, Marra MA, Schein J, Anderson MK, Brockton V, Buckley KM, Cohen AH, Fugmann SD, Hibino T, Loza-Coll M, Majeske AJ, Messier C, Nair SV, Pancer Z, Terwilliger DP, Agca C, Arboleda E, Chen N, Churcher AM, Hallböök F, Humphrey GW, Idris MM, Kiyama T, Liang S, Mellott D, Mu X, Murray G, Olinski RP, Raible F, Rowe M, Taylor JS, Tessmar-Raible K, Wang D, Wilson KH, Yaguchi S, Gaasterland T, Galindo BE, Gunaratne HJ, Juliano C, Kinukawa M, Moy GW, Neill AT, Nomura M, Raisch M, Reade A, Roux MM, Song JL, Su YH, Townley IK, Voronina E, Wong JL, Amore G, Branno M, Brown ER, Cavalieri V, Duboc V, Duloquin L, Flytzanis C, Gache C, Lapraz F, Lepage T, Locascio A, Martinez P, Matassi G, Matranga V, Range R, Rizzo F, Röttinger E, Beane W, Bradham C, Byrum C, Glenn T, Hussain S, Manning G, Miranda E, Thomason R, Walton K, Wikramanayke A, Wu SY, Xu R, Brown CT, Chen L, Gray RF, Lee PY, Nam J, Oliveri P, Smith J, Muzny D, Bell S, Chacko J, Cree A, Curry S, Davis C, Dinh H, Dugan-Rocha S, Fowler J, Gill R, Hamilton C, Hernandez J, Hines S, Hume J, Jackson L, Jolivet A, Kovar C, Lee S, Lewis L, Miner G, Morgan M, Nazareth LV, Okwuonu G, Parker D, Pu LL, Thorn R, and Wright R. (2006) The genome of the sea urchin Strongylocentrotus purpuratus. Science. 314(5801):941-952. PMID: 17095691

Raible, F., Tessmar-Raible, K., Arboleda, E., Kaller, T., Bork, P., Arendt, D., and Arnone, M.I. (2006) Opsins and clusters of sensory G-protein-coupled receptors in the sea urchin genome. Dev. Biol. 300(1):461-475. PMID: 17067569

Raible, F., Tessmar-Raible, K., Osoegawa, K., Wincker, P., Jubin, C., Balavoine, G., Ferrier, D., Benes, V., de Jong, P., Weissenbach, J., Bork, P., and Arendt, D. (2005) Vertebrate-type intron-rich genes in the marine annelid Platynereis dumerilii. Science. 310(5752):1325-1326. PMID: 16311335

Raible F, Arendt D. (2004) Metazoan evolution: some animals are more equal than others. Curr Biol. 14(3):R106-8. Review. PMID: 14986636

Shao, Z., Raible, F., Mollaaghababa, R., Guyon, J.R., Wu, C.T., Bender, W. and Kingston, R.E. (1999) Stabilization of chromatin structure by PRC1, a Polycomb complex. Cell 98(1):37-46.