Gene

ldb1a

ID

ZDB-GENE-990415-138

Name

LIM domain binding 1a

Symbol

ldb1a Nomenclature History

Previous Names

ldb4 (1)

Type

protein_coding_gene

Location

Chr: 13 Mapping Details/Browsers

Description

Enables LIM domain binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II; nervous system development; and positive regulation of transcription by RNA polymerase II. Located in nucleus. Is expressed in brain; eye; gill; heart; and pleuroperitoneal region. Orthologous to human LDB1 (LIM domain binding 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

5 figures from 5 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:114025 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With ldb1a Human Ortholog

No data available

Associated With ldb1a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR041363	LIM interaction domain
Family	IPR029005	LIM-domain binding protein/SEUSS

Domain Details Per Protein

Protein	Additional Resources	Length
UniProtKB:F1R491	InterPro	352
UniProtKB:A0A8M3BEM2	InterPro	416
UniProtKB:A0A8M3AZ27	InterPro	354
UniProtKB:A0A8M3AZ24	InterPro	413
UniProtKB:A0A8M2B3N6	InterPro	381
UniProtKB:A0A8M2B3I2	InterPro	380
UniProtKB:A0A8M2B2T8	InterPro	376
UniProtKB:O73712	InterPro	374
UniProtKB:A0A2R8RV37	InterPro	352
UniProtKB:A0A8M6Z3Q7	InterPro	410
UniProtKB:A0A8M3BEM6	InterPro	357
UniProtKB:A0A8M3AZ48	InterPro	359
UniProtKB:A0A8M3B801	InterPro	411
UniProtKB:A0A8M6Z275	InterPro	412
UniProtKB:A0A8M9PXM7	InterPro	414
UniProtKB:A0A8M6Z9I1	InterPro	353
UniProtKB:A0A8M6Z933	InterPro	417
UniProtKB:O73715	InterPro	374
UniProtKB:A0A8M2B326	InterPro	418
UniProtKB:A0AB32TYV1	InterPro	417
UniProtKB:A0AB32TZK5	InterPro	411
UniProtKB:A0AB32U136	InterPro	412
UniProtKB:A0AB32U176	InterPro	357
UniProtKB:A0AB32U1M0	InterPro	410
UniProtKB:A0AB32U1Z9	InterPro	354
UniProtKB:A0AB32U271	InterPro	416
UniProtKB:A0AB32U3D5	InterPro	413
UniProtKB:A0AB32U3U2	InterPro	353
UniProtKB:A0AB32U439	InterPro	314
UniProtKB:A0AB32U4W8	InterPro	359
UniProtKB:A0AB32U5Q7	InterPro	316

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	ldb1a-201 (1) Ensembl	Ensembl	2,276 nt	Select Tool ZFIN BLAST
mRNA	ldb1a-203 (1) Ensembl	Ensembl	2,986 nt	Select Tool ZFIN BLAST
mRNA	ldb1a-204 (1) Ensembl	Ensembl	5,819 nt	Select Tool ZFIN BLAST
ncRNA	ldb1a-003 (1) Ensembl	Ensembl	419 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations