Gene

hoxd3a

ID
ZDB-GENE-990415-120
Name
homeobox D3a
Symbol
hoxd3a Nomenclature History
Previous Names
  • hoxd3
  • im:7144208 (1)
  • Z-56
Type
protein_coding_gene
Location
Chr: 9 Mapping Details/Browsers
Description
Predicted to have DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification; embryonic skeletal system morphogenesis; and positive regulation of transcription by RNA polymerase II. Predicted to localize to nucleus. Is expressed in several structures, including hindbrain; hindbrain neural keel; neural tube; pectoral fin bud; and spinal cord. Orthologous to human HOXD3 (homeobox D3).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
14 figures from 8 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With hoxd3a Human Ortholog
No data available
Associated With hoxd3a Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Conserved_site IPR001827 Homeobox protein, antennapedia type, conserved site
Conserved_site IPR017970 Homeobox, conserved site
Domain IPR001356 Homeodomain
Domain IPR020479 Homeodomain, metazoa
Domain IPR025281 Domain of unknown function DUF4074
Homologous_superfamily IPR009057 Homedomain-like superfamily
Domain Details Per Protein
Protein Length Domain of unknown function DUF4074 Homedomain-like superfamily Homeobox, conserved site Homeobox protein, antennapedia type, conserved site Homeodomain Homeodomain, metazoa
UniProtKB:O42370 396
UniProtKB:A0A8M9PRW4 396
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA hoxd3a-201 (1) Ensembl 2,567 nt
mRNA hoxd3a-203 (1) Ensembl 1,970 nt
mRNA hoxd3a-204 (1) Ensembl 1,919 nt
ncRNA hoxd3a-002 (1) Ensembl 480 nt
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations