Gene

vimr2

ID

ZDB-GENE-160113-76

Name

vimentin-related 2

Symbol

vimr2 Nomenclature History

Previous Names

si:dkey-76i15.1 (1)

Type

protein_coding_gene

Location

Chr: 14 Mapping Details/Browsers

Description

Predicted to localize to intermediate filament. Is expressed in notochord and tail bud.

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

5 figures from Goto et al., 2017

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With vimr2 Human Ortholog

No data available

Associated With vimr2 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR039008	Intermediate filament, rod domain
Family	IPR050405	Intermediate filament structural protein

Domain Details Per Protein

Protein	Length	Intermediate filament, rod domain	Intermediate filament structural protein
UniProtKB:A0A2R8Q9K7 InterPro	390

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	vimr2-201 (1) Ensembl	Ensembl	3,102 nt	Select Tool ZFIN BLAST
mRNA	vimr2-202 (1) Ensembl	Ensembl	4,696 nt	Select Tool ZFIN BLAST
mRNA	vimr2-203 (1) Ensembl	Ensembl	4,624 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations