Gene

smarca4b

ID
ZDB-GENE-140106-1
Name
SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4b
Symbol
smarca4b Nomenclature History
Previous Names
  • zmp:0000001041 (1)
Type
protein_coding_gene
Location
Chr: 6 Mapping Details/Browsers
Description
Is expressed in telencephalon.
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
1 figure from Diotel et al., 2015
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With smarca4b Human Ortholog
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
Coffin-Siris syndrome 4 Alliance Coffin-Siris syndrome 4 614609
rhabdoid tumor predisposition syndrome 2 Alliance {Rhabdoid tumor predisposition syndrome 2} 613325
?Otosclerosis 12 620792
Associated With smarca4b Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Conserved_site IPR018359 Bromodomain, conserved site
Domain IPR000330 SNF2, N-terminal
Domain IPR001487 Bromodomain
Domain IPR001650 Helicase, C-terminal domain-like
Domain IPR006576 BRK domain
Domain IPR014001 Helicase superfamily 1/2, ATP-binding domain
Domain IPR014012 Helicase/SANT-associated domain
Domain IPR014978 Glutamine-Leucine-Glutamine, QLQ
Domain IPR029295 Snf2, ATP coupling domain
Domain IPR030100 SWI/SNF complex subunit BRG1, ATP-binding
Domain IPR049730 SNF2/RAD5-like, C-terminal helicase domain
Homologous_superfamily IPR027417 P-loop containing nucleoside triphosphate hydrolase
Homologous_superfamily IPR036427 Bromodomain-like superfamily
Homologous_superfamily IPR037259 BRK domain superfamily
Homologous_superfamily IPR038718 SNF2-like, N-terminal domain superfamily
Domain Details Per Protein
Protein Additional Resources Length BRK domain BRK domain superfamily Bromodomain Bromodomain, conserved site Bromodomain-like superfamily Glutamine-Leucine-Glutamine, QLQ Helicase, C-terminal domain-like Helicase/SANT-associated domain Helicase superfamily 1/2, ATP-binding domain P-loop containing nucleoside triphosphate hydrolase Snf2, ATP coupling domain SNF2-like, N-terminal domain superfamily SNF2, N-terminal SNF2/RAD5-like, C-terminal helicase domain SWI/SNF complex subunit BRG1, ATP-binding
UniProtKB:A0A8M9QFL5 InterPro 1619
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA smarca4-201 (1) Ensembl 4,695 nt
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations