Gene

rbfox3b

ID

ZDB-GENE-091204-46

Name

RNA binding fox-1 homolog 3b

Symbol

rbfox3b Nomenclature History

Previous Names

rbfox3l
si:ch73-322f21.1 (1)

Type

protein_coding_gene

Location

Chr: 3 Mapping Details/Browsers

Description

Predicted to have mRNA binding activity. Predicted to be involved in nervous system development and regulation of alternative mRNA splicing, via spliceosome. Localizes to nucleus. Is expressed in brain and spinal cord. Orthologous to human RBFOX3 (RNA binding fox-1 homolog 3).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

2 figures from 2 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With rbfox3b Human Ortholog

No data available

Associated With rbfox3b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000504	RNA recognition motif domain
Domain	IPR025670	Fox-1 C-terminal domain
Domain	IPR034237	FOX1, RNA recognition motif
Family	IPR017325	RNA binding protein fox-1 homolog 1-3
Family	IPR047131	RNA binding protein fox-1 homolog 1-like
Homologous_superfamily	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily	IPR035979	RNA-binding domain superfamily

Domain Details Per Protein

Protein	Length	Fox-1 C-terminal domain	FOX1, RNA recognition motif	Nucleotide-binding alpha-beta plait domain superfamily	RNA-binding domain superfamily	RNA binding protein fox-1 homolog 1-3	RNA binding protein fox-1 homolog 1-like	RNA recognition motif domain
UniProtKB:A0A8M9PBK7 InterPro	334
UniProtKB:A0A8M9PBK2 InterPro	359
UniProtKB:A0A8M9PN39 InterPro	356
UniProtKB:A0A8M9Q1D6 InterPro	345
UniProtKB:A0A8M9PBL0 InterPro	328
UniProtKB:A0A8M6YZ68 InterPro	317

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	rbfox3b-201 (1) Ensembl	Ensembl	912 nt	Select Tool ZFIN BLAST
mRNA	rbfox3b-202 (1) Ensembl	Ensembl	1,254 nt	Select Tool
mRNA	rbfox3b-204 (1) Ensembl	Ensembl	861 nt	Select Tool
mRNA	rbfox3b-205 (1) Ensembl	Ensembl	1,311 nt	Select Tool ZFIN BLAST
mRNA	rbfox3b-206 (1) Ensembl	Ensembl	819 nt	Select Tool ZFIN BLAST
ncRNA	rbfox3b-003 (1) Ensembl	Ensembl	425 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations