Gene

camta1a

ID

ZDB-GENE-090312-183

Name

calmodulin binding transcription activator 1a

Symbol

camta1a Nomenclature History

Previous Names

si:dkey-223i19.5

Type

protein_coding_gene

Location

Chr: 23 Mapping Details/Browsers

Description

Predicted to have sequence-specific DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to localize to nucleus. Human ortholog(s) of this gene implicated in nonprogressive cerebellar ataxia with mental retardation. Orthologous to human CAMTA1 (calmodulin binding transcription activator 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Diotel et al., 2015

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With camta1a Human Ortholog

Disease Ontology Term	Multi-Species Data	OMIM Term	OMIM Phenotype ID
nonprogressive cerebellar ataxia with mental retardation	Alliance	Cerebellar dysfunction with variable cognitive and behavioral abnormalities	614756

Associated With camta1a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Binding_site	IPR000048	IQ motif, EF-hand binding site
Domain	IPR002909	IPT domain
Domain	IPR005559	CG-1 DNA-binding domain
Homologous_superfamily	IPR013783	Immunoglobulin-like fold
Homologous_superfamily	IPR014756	Immunoglobulin E-set
Homologous_superfamily	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Homologous_superfamily	IPR036770	Ankyrin repeat-containing domain superfamily
Repeat	IPR002110	Ankyrin repeat

Domain Details Per Protein

Protein	Length	Ankyrin repeat	Ankyrin repeat-containing domain superfamily	CG-1 DNA-binding domain	Immunoglobulin E-set	Immunoglobulin-like fold	IPT domain	IQ motif, EF-hand binding site	P-loop containing nucleoside triphosphate hydrolase
UniProtKB:A0A8M9PFK5 InterPro	1817
UniProtKB:A0A8M9Q822 InterPro	1578
UniProtKB:A0A8M9PWY3 InterPro	1771
UniProtKB:A0A8M9PQV2 InterPro	726
UniProtKB:A0A8M9Q3X1 InterPro	1550
UniProtKB:A0A8M3ANU5 InterPro	1799
UniProtKB:A0A8M9P5K3 InterPro	1818
UniProtKB:A0A8M6Z3X4 InterPro	1800
UniProtKB:A0A8M9PL98 InterPro	1784
UniProtKB:A0A8M2B977 InterPro	1800
UniProtKB:A0A8M9P5K7 InterPro	726
UniProtKB:A0A8M9PE49 InterPro	1446
UniProtKB:A0A8M9PTM2 InterPro	1667
UniProtKB:A0A8M9PX14 InterPro	1596

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	camta1a-201 (1) Ensembl	Ensembl		9,500 nt	Select Tool ZFIN BLAST
mRNA	camta1a-202 (1) Ensembl	Ensembl		603 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations