Gene

limch1a

ID
ZDB-GENE-090312-153
Name
LIM and calponin homology domains 1a
Symbol
limch1a Nomenclature History
Previous Names
  • si:ch211-157h5.2
Type
protein_coding_gene
Location
Chr: 1 Mapping Details/Browsers
Description
Predicted to have myosin II head/neck binding activity. Predicted to be involved in positive regulation of stress fiber assembly and regulation of focal adhesion assembly. Predicted to colocalize with myosin II complex. Is expressed in trunk vasculature. Orthologous to human LIMCH1 (LIM and calponin homology domains 1).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
1 figure from Kartopawiro et al., 2014
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With limch1a Human Ortholog
No data available
Associated With limch1a Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR001715 Calponin homology domain
Domain IPR001781 Zinc finger, LIM-type
Domain IPR031865 Domain of unknown function DUF4757
Family IPR001997 Calponin/LIMCH1
Family IPR003096 Smooth muscle protein/calponin
Homologous_superfamily IPR036872 CH domain superfamily
Domain Details Per Protein
Protein Length Calponin homology domain Calponin/LIMCH1 CH domain superfamily Domain of unknown function DUF4757 Smooth muscle protein/calponin Zinc finger, LIM-type
UniProtKB:A0A8M9PV51 1844
UniProtKB:A0A8M9PHW0 1960
UniProtKB:A0A8M2BFN7 1057
UniProtKB:A0A8M9Q153 1068
UniProtKB:A0A8M2BG98 1138
UniProtKB:B8A4X7 1019
UniProtKB:A0A8M9PV53 1572
UniProtKB:A0A8M9QBW7 1854
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA limch1a-201 (1) Ensembl 3,454 nt
ncRNA limch1a-002 (1) Ensembl 931 nt
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations