Gene

sdk1b

ID
ZDB-GENE-090311-17
Name
sidekick cell adhesion molecule 1b
Symbol
sdk1b Nomenclature History
Previous Names
  • si:rp71-86k19.1 (1)
  • zgc:171522 (1)
Type
protein_coding_gene
Location
Chr: 1 Mapping Details/Browsers
Description
Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules; retina layer formation; and synapse assembly. Predicted to localize to synapse. Is expressed in ciliary marginal zone; retinal ganglion cell layer; retinal inner nuclear layer; and retinal outer nuclear layer. Orthologous to human SDK1 (sidekick cell adhesion molecule 1).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
4 figures from Galicia et al., 2018
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With sdk1b Human Ortholog
No data available
Associated With sdk1b Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR003598 Immunoglobulin subtype 2
Domain IPR003599 Immunoglobulin domain subtype
Domain IPR003961 Fibronectin type III
Domain IPR007110 Immunoglobulin-like domain
Domain IPR013098 Immunoglobulin I-set
Homologous_superfamily IPR013783 Immunoglobulin-like fold
Homologous_superfamily IPR036116 Fibronectin type III superfamily
Homologous_superfamily IPR036179 Immunoglobulin-like domain superfamily
Domain Details Per Protein
Protein Length Fibronectin type III Fibronectin type III superfamily Immunoglobulin domain subtype Immunoglobulin I-set Immunoglobulin-like domain Immunoglobulin-like domain superfamily Immunoglobulin-like fold Immunoglobulin subtype 2
UniProtKB:A0A8M6Z668 2283
UniProtKB:A0A8M9PWZ9 1223
UniProtKB:A0A8M9Q823 2291
UniProtKB:A0A8M6YY19 2292
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA sdk1b-201 (1) Ensembl 5,871 nt
mRNA sdk1b-202 (1) Ensembl 6,642 nt
mRNA sdk1b-203 (1) Ensembl 935 nt
mRNA sdk1b-204 (1) Ensembl 1,073 nt
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations