Gene

rcn1

ID

ZDB-GENE-080225-33

Name

reticulocalbin 1, EF-hand calcium binding domain

Symbol

rcn1 Nomenclature History

Previous Names

im:7158588
wu:fa06h02

Type

protein_coding_gene

Location

Chr: 7 Mapping Details/Browsers

Description

Predicted to have calcium ion binding activity. Predicted to localize to endoplasmic reticulum. Is expressed in several structures, including axial mesoderm; chordo neural hinge; epidermis; head; and pectoral fin. Orthologous to human RCN1 (reticulocalbin 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

8 figures from 2 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:7158588 (19 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With rcn1 Human Ortholog

No data available

Associated With rcn1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Binding_site	IPR018247	EF-Hand 1, calcium-binding site
Domain	IPR002048	EF-hand domain
Family	IPR027241	Reticulocalbin-1
Homologous_superfamily	IPR011992	EF-hand domain pair

Domain Details Per Protein

Protein	Length	EF-Hand 1, calcium-binding site	EF-hand domain	EF-hand domain pair	Reticulocalbin-1
UniProtKB:F1R369 InterPro	320

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	rcn1-201 (1) Ensembl	Ensembl		2,039 nt	Select Tool
ncRNA	rcn1-002 (1) Ensembl	Ensembl		820 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations