Gene

patl1

ID

ZDB-GENE-070209-83

Name

PAT1 homolog 1, processing body mRNA decay factor

Symbol

patl1 Nomenclature History

Previous Names

fa11d04
wu:fa11d04
zgc:158239 (1)

Type

protein_coding_gene

Location

Chr: 1 Mapping Details/Browsers

Description

Predicted to have RNA binding activity. Predicted to be involved in cytoplasmic mRNA processing body assembly and deadenylation-dependent decapping of nuclear-transcribed mRNA. Predicted to colocalize with CCR4-NOT complex. Orthologous to human PATL1 (PAT1 homolog 1, processing body mRNA decay factor).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

2 figures from 2 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:7141267 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With patl1 Human Ortholog

No data available

Associated With patl1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR019167	mRNA decay factor PAT1 domain
Family	IPR039900	Pat1-like

Domain Details Per Protein

Protein	Length	mRNA decay factor PAT1 domain	Pat1-like
UniProtKB:A2RRV3 InterPro	765

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	patl1-201 (1) Ensembl	Ensembl	3,623 nt	Select Tool ZFIN BLAST
mRNA	patl1-203 (1) Ensembl	Ensembl	2,359 nt	Select Tool
ncRNA	patl1-002 (1) Ensembl	Ensembl	198 nt	Select Tool
ncRNA	patl1-003 (1) Ensembl	Ensembl	857 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations