Gene

gtf3c5

ID

ZDB-GENE-060810-66

Name

general transcription factor IIIC, polypeptide 5

Symbol

gtf3c5 Nomenclature History

Previous Names

im:7156509

Type

protein_coding_gene

Location

Chr: 21 Mapping Details/Browsers

Description

Predicted to contribute to RNA polymerase III transcription regulator recruiting activity; RNA polymerase III type 1 promoter sequence-specific DNA binding activity; and RNA polymerase III type 2 promoter sequence-specific DNA binding activity. Predicted to be involved in transcription initiation from RNA polymerase III promoter. Predicted to localize to transcription factor TFIIIC complex. Orthologous to human GTF3C5 (general transcription factor IIIC subunit 5).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

2 figures from 2 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:7156509 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With gtf3c5 Human Ortholog

No data available

Associated With gtf3c5 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR019136	Transcription factor IIIC subunit 5, HTH domain
Domain	IPR041499	Transcription factor IIIC subunit Tfc1/Sfc1, triple barrel domain
Family	IPR040454	Transcription factor IIIC subunit Tfc1/Sfc1
Homologous_superfamily	IPR042536	TFIIIC, subcomplex tauA subunit Sfc1, triple barrel domain superfamily

Domain Details Per Protein

Protein	Length	TFIIIC, subcomplex tauA subunit Sfc1, triple barrel domain superfamily	Transcription factor IIIC subunit 5, HTH domain	Transcription factor IIIC subunit Tfc1/Sfc1	Transcription factor IIIC subunit Tfc1/Sfc1, triple barrel domain
UniProtKB:E7EZ29 InterPro	529

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	gtf3c5-201 (1) Ensembl	Ensembl		1,856 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations