Gene

clip1a

ID

ZDB-GENE-060526-282

Name

CAP-GLY domain containing linker protein 1a

Symbol

clip1a Nomenclature History

Previous Names

clip1
si:dkey-273o13.1

Type

protein_coding_gene

Location

Chr: 5 Mapping Details/Browsers

Description

Involved in positive regulation of microtubule polymerization. Orthologous to human CLIP1 (CAP-Gly domain containing linker protein 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Weng et al., 2013

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: 1 Figure from Weng et al., 2013
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With clip1a Human Ortholog

No data available

Associated With clip1a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000938	CAP Gly-rich domain
Domain	IPR032108	CLIP1, zinc knuckle
Homologous_superfamily	IPR036859	CAP Gly-rich domain superfamily

Domain Details Per Protein

Protein	Length	CAP Gly-rich domain	CAP Gly-rich domain superfamily	CLIP1, zinc knuckle
UniProtKB:A0A8M3ASW5 InterPro	1443
UniProtKB:A0A8M3B021 InterPro	1534
UniProtKB:A0A8M3B2Z4 InterPro	1537
UniProtKB:E7F2X0 InterPro	1569

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	clip1a-201 (1) Ensembl	Ensembl		4,710 nt	Select Tool ZFIN BLAST
mRNA	clip1a-202 (1) Ensembl	Ensembl		1,366 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations