Gene

gpcpd1

ID

ZDB-GENE-060503-472

Name

glycerophosphocholine phosphodiesterase 1

Symbol

gpcpd1 Nomenclature History

Previous Names

si:rp71-81o21.1 (1)
zgc:103717

Type

protein_coding_gene

Location

Chr: 20 Mapping Details/Browsers

Description

Predicted to enable glycerophosphocholine phosphodiesterase activity. Predicted to be involved in glycerophospholipid catabolic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in cytoplasm. Orthologous to human GPCPD1 (glycerophosphocholine phosphodiesterase 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:103717 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With gpcpd1 Human Ortholog

No data available

Associated With gpcpd1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR002044	Carbohydrate binding module family 20
Domain	IPR030395	Glycerophosphodiester phosphodiesterase domain
Domain	IPR034839	Glycerophosphocholine phosphodiesterase GPCPD1, CBM20 domain
Family	IPR051578	Glycerophosphodiester Phosphodiesterase
Homologous_superfamily	IPR013783	Immunoglobulin-like fold
Homologous_superfamily	IPR013784	Carbohydrate-binding-like fold
Homologous_superfamily	IPR017946	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily

Domain Details Per Protein

Protein	Length	Carbohydrate-binding-like fold	Carbohydrate binding module family 20	Glycerophosphocholine phosphodiesterase GPCPD1, CBM20 domain	Glycerophosphodiester Phosphodiesterase	Glycerophosphodiester phosphodiesterase domain	Immunoglobulin-like fold	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily
UniProtKB:A0A8M9PSM9 InterPro	701
UniProtKB:A0A8M9PHA0 InterPro	727
UniProtKB:Q1LVM1 InterPro	666
UniProtKB:A0A8M3AWH0 InterPro	592

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	gpcpd1-201 (1) Ensembl	Ensembl	2,366 nt	Select Tool ZFIN BLAST
mRNA	gpcpd1-202 (1) Ensembl	Ensembl	2,001 nt	Select Tool ZFIN BLAST
mRNA	gpcpd1-203 (1) Ensembl	Ensembl	345 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations