Gene

sec31b

ID

ZDB-GENE-060418-2

Name

SEC31 homolog B, COPII coat complex component

Symbol

sec31b Nomenclature History

Previous Names

sec31l2 (1)

Type

protein_coding_gene

Location

Chr: 12 Mapping Details/Browsers

Description

Predicted to enable structural molecule activity. Predicted to be involved in COPII-coated vesicle cargo loading; endoplasmic reticulum organization; and intracellular protein transport. Predicted to act upstream of or within endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of COPII vesicle coat. Predicted to be active in endoplasmic reticulum exit site. Orthologous to human SEC31B (SEC31 homolog B, COPII coat complex component).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Niu et al., 2012

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: 1 Figure from Niu et al., 2014
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With sec31b Human Ortholog

No data available

Associated With sec31b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR019775	WD40 repeat, conserved site
Domain	IPR024298	Ancestral coatomer element 1, Sec16/Sec31
Family	IPR040251	Protein transport protein SEC31-like
Homologous_superfamily	IPR015943	WD40/YVTN repeat-like-containing domain superfamily
Homologous_superfamily	IPR036322	WD40-repeat-containing domain superfamily
Repeat	IPR001680	WD40 repeat

Domain Details Per Protein

Protein	Length	Ancestral coatomer element 1, Sec16/Sec31	Protein transport protein SEC31-like	WD40 repeat	WD40 repeat, conserved site	WD40-repeat-containing domain superfamily	WD40/YVTN repeat-like-containing domain superfamily
UniProtKB:E7F114 InterPro	1171
UniProtKB:A0A8M2BKB4 InterPro	1174

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	sec31b-201 (1) Ensembl	Ensembl	4,073 nt	Select Tool ZFIN BLAST
mRNA	sec31b-202 (1) Ensembl	Ensembl	422 nt	Select Tool ZFIN BLAST
mRNA	sec31b-204 (1) Ensembl	Ensembl	4,172 nt	Select Tool ZFIN BLAST
ncRNA	sec31b-003 (1) Ensembl	Ensembl	758 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations